These are nucleotidic sequences with some "NNNN..." always of the same length but in different positions.(we have about 300.000 >Id different sequences). The "NNNN..." may occur one time,two times, 3 or max 4 time (or 0). My question is:
Is there anyway to coount how many >Id occur with one "NNNN.." how many reads 2,3,4 and 0 over the total 300.000?
I mean something that at the end would be for exemple from 300.000 >Ids
Code:
100.000 have one "NNNN..."
200.000 have two "NNNN..."
50.000 have three "NNNN..."
30.000 have four "NNNN.."
20.000 don't have any "NNNN.."
The lines are always the same type
>Id..
letter......with or without a variable number of block of "NNNN..." .
(In the "NNNN..." block the number of N is always the same, they are adaptors in every lines across the other letter A,C,G,T)
I hope to have been clear and that anyone can help me...
Please...!!!
Moderator's Comments:
Please use code tags when posting data and code samples!
Last edited by vgersh99; 11-10-2011 at 10:43 AM..
Reason: code tags, please!
Hi,
Let me explain the problem clearly:
Let the entries in my file be:
lion,tiger,bear
apple,mango,orange,apple,grape
unix,windows,solaris,windows,linux
red,blue,green,yellow
orange,maroon,pink,violet,orange,pink
Can we detect the lines in which one of the words(separated by field... (8 Replies)
Hello,
i am trying to write a script file in awk which yields me the number of lines,characters and words, i checked it many many times but i am not able to find any mistake in it. Please tell me where i went wrong.
BEGIN{
print "Filename Lines Words Chars\n"
}
{
filename=filename + 1... (2 Replies)
Please help in the following problem:
Input is:
Pritam
123
456
Patil
myname
youname
Pritam
myproject
thisproject
iclic
Patil
remaining text
some more text
I need the command which will display the no of lines between two words in the whole file.
e.g. Display all the no of lines... (5 Replies)
Hi, does anyone know the command to count words by its length.
I need to Count the number of five letter words that I have in a file with thousand of words.
thanks (3 Replies)
hello,
i 'd like your help about a bash script which:
1. finds inside the html file (it is attached with my post) the code number of the Latest Stable Kernel,
2.finds the link which leads to the download location of the Latest Stable Kernel version,
(the right link should lead to the file... (3 Replies)
Hello,
I need to tail -f a file output stream and I need to get only lines that contains "get" and "point" in the same line. It doesn't matter the order.
Then I need only the text BEFORE "point".
I have to count each line and perform other serveral actions after this has performed 3 times.... (9 Replies)
Hi ,
I need to count the number of errors associated with the two words occurring in the file. It's about counting the occurrences of the word "error" for where is the word "index.js". As such the command should look like. Please kindly help. I was trying: grep "error" log.txt | wc -l (1 Reply)
hi all
how to count words from a text
aaa bbb ccc ddd
123 aaa 123 aaa
aaa ddd 123
i need to cout hoe many time the words "aaa" and "123" each appears
the output should be
4 3
or
4
3
or
aaa 4
123 3
thanks (10 Replies)
Is there an efficient awk that can count the number of lines that occur in between two tags.
For instance, consider the following text:
<s>
Hi PP -
my VBD -
name DT -
is NN -
. SENT .
</s>
<s>
Her PP -
name VBD -
is DT -
the NN -
same WRT -
. SENT -
</s>
I am interested to know... (4 Replies)
Hello,
I have a dictionary which I am building for the Open Source Community. The data structure is as under
HEADWORD=PARTOFSPEECH=ENGLISH MEANING
as shown in the example below
अ=m=Prefix signifying negation.
अँहँ=ind=Interjection expressing disapprobation.
अं=int=An interjection... (2 Replies)
Discussion started by: gimley
2 Replies
LEARN ABOUT OPENSOLARIS
compile_link
COMPILE_LINK(1p) User Contributed Perl Documentation COMPILE_LINK(1p)NAME
compile_link -- compile and copy Interchange link CGI
VERSION
1.0
SYNOPSIS
compile_link [-p NNNN] [-s sfile] [-h host] [-w N] \
[--perl] [-nf] [-o outputfile] [-b dir] [-s dir]
DESCRIPTION
The "compile_link" program configures (including compilation if necessary) a link CGI for talking to the Interchange server daemon.
If the --perl option is given, it will not compile but instead use the tlink.pl program, setting its variables as needed.
Designed to be used in conjunction with Interchange's makecat.
OPTIONS -b dir, --build=dir
Sets the directory where the build files will be made. Default is "src" in the Interchange software directory.
-h hostname, --host=hostname
Sets the host address or host name that should be compiled into the TCP-based link program. This sets the default, which still can be
overridden by "MINIVEND_HOST" in the environment of the executing process.
-p NNNN, --port=NNNN
Sets the port number that should be compiled into the TCP-based link program. This sets the default, which still can be overridden by
"MINIVEND_PORT" in the environment of the executing process. The port must be higher than 1024.
-s sfile, --socket=sfile
The name of the UNIX-domain socket file which should be compiled into the UNIX-domain link program. This sets the default, which still
can be overridden by "MINIVEND_SOCKET" in the environment of the executing process.
--source=dir
Sets the directory containing the source files. Default is "src" in the Interchange software directory.
-w N, --timeout=N
The number of seconds the link program should wait for a connection before sending its timeout page.
SEE ALSO makecat(1), http://www.icdevgroup.org/
AUTHOR
Mike Heins
perl v5.14.2 2012-01-23 COMPILE_LINK(1p)
11-10-2011
