Sponsored Content
Top Forums Shell Programming and Scripting (BASH) Using a loop variable to grep something in a file? Post 302572093 by DMini on Wednesday 9th of November 2011 07:43:47 AM
Old 11-09-2011
(BASH) Using a loop variable to grep something in a file?

Hi,

I have a loop running until a variable L that is read previously in the full script. I'd like to grep some information in an input file at a line that contains the value of the loop parameter $i.
I've tried to use grep, but the problem is nothing is written in the FILE files. It seems grep cannot find "$i".
(I've tried to avoid awk to keep the sed etc I'm using after.)
Any idea?

Thanks in advance!

Code:
#!/bin/bash
L=5 
INPUT=input

for i in $(eval echo {0..$L}) 
do
    FILE=File$i.dat
    test -e $FILE || touch $FILE
    grep "#stuff 1 1 $i stuff_i_want_to_get"   $INPUT | sed "y/(),/   /" | cut -d' ' -f6-  >> $FILE
done

 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

bash and ksh: variable lost in loop in bash?

Hi, I use AIX (ksh) and Linux (bash) servers. I'm trying to do scripts to will run in both ksh and bash, and most of the time it works. But this time I don't get it in bash (I'm more familar in ksh). The goal of my script if to read a "config file" (like "ini" file), and make various report.... (2 Replies)
Discussion started by: estienne
2 Replies

2. Shell Programming and Scripting

grep'ing a variable that contains a metacharacter ($) with a while loop

This is driving me crazy, and I'm hoping someone can help me out with this. I'm trying to do a simple while loop to go through a log file. I'm pulling out all of the lines with a specific log line, getting an ID from that line, and once I have a list of IDs I want to loop back through the log and... (2 Replies)
Discussion started by: DeCoTwc
2 Replies

3. UNIX for Dummies Questions & Answers

Help with 3 variable bash loop

Hi all! I think someone might be able to solve my problem pretty easily. I am trying to run a bash loop with 3 variables. I know how to do: for var1 in `cat list1`; do for var2 in `cat list2`; do for var3 in `cat list3`; command var1 var2 > var3; done; done; done However, this will run all... (4 Replies)
Discussion started by: torchij
4 Replies

4. UNIX for Dummies Questions & Answers

Problem with multiple grep in bash loop

Hello, I am trying to create a matrix of 0's and 1's depending on whether a gene and sample name are found in the same line in a file called results.txt. An example of the results.txt file is (tab-delimited): Sample1 Gene1 ## Gene2 ## Sample2 Gene2 ## Gene 4 ## Sample3 Gene3 ... (2 Replies)
Discussion started by: InfoSeeker2
2 Replies

5. Shell Programming and Scripting

Detail on For loop for multiple file input and bash variable usage

Dear mentors, I just need little explanation regarding for loop to give input to awk script for file in `ls *.txt |sort -t"_" -k2n,2`; do awk script $file done which sorts file in order, and will input one after another file in order to awk script suppose if I have to input 2 or... (4 Replies)
Discussion started by: Akshay Hegde
4 Replies

6. Programming

Global variable in for loop (BASH)

Hello, I'm trying to read the variable "pause" from a for loop without luck. The function is dependant on the outcome of the test within the loop. If i run this, pause is always 0 within the function. Any ideas? Thanks. pause=0 users=1 (for (( ; ; )) do speed=`cat speed.log` ... (7 Replies)
Discussion started by: shadyuk
7 Replies

7. Shell Programming and Scripting

Bash for loop with arrays second variable?

I am fairly new to bash and am not sure how to resolve this: I have a series of geographical long/lat points eg. 50/-30 listed on separate lines in a file called junk2. I have input these into an array and am then using that array in a for loop. Towards the end of the loop I create a file called... (4 Replies)
Discussion started by: lily-anne
4 Replies

8. Shell Programming and Scripting

How to use grep in a loop using a bash script?

Dear all, Please help with the following. I have a file, let's call it data.txt, that has 3 columns and approx 700,000 lines, and looks like this: rs1234 A C rs1236 T G rs2345 G T Please use code tags as required by forum rules! I have a second file, called reference.txt,... (1 Reply)
Discussion started by: aberg
1 Replies

9. Shell Programming and Scripting

Bash variable available for use outside loop

In the below for loop, I extract a variable $d which is an id that will change each time. The bash executes the problem that I am having is that p (after the done) is the path with the extracted $d. However, I can not use it in subsequent loops as it is not reconized. I have been trying to change... (3 Replies)
Discussion started by: cmccabe
3 Replies

10. UNIX for Beginners Questions & Answers

Bash Variable scope - while loop while reading from a file

Cope sample1: test.sh i=0 echo " Outside loop i = $i " while do i=$(( $i + 1)) echo "Inside loop i = $i " done echo " Out of loop i is : $i " When run output : Outside loop i = 0 Inside loop i = 1 Inside loop i = 2 Inside loop i = 3 Inside loop i = 4 Inside loop i = 5 Inside... (8 Replies)
Discussion started by: Adarshreddy01
8 Replies
All times are GMT -4. The time now is 10:10 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy