11-06-2011
Thanks a lot ahmed i will give it ago and let you know.
Happy Eid
cheers
---------- Post updated at 04:38 PM ---------- Previous update was at 03:11 AM ----------
Hi again,
I tried the command above, and found there is No Info found for the list file. However, this is not the case when I take a word from the list file and do grep Gene1 file1.txt and I got results (The whole strings that I want). Also I wanted to know if I can put the result into an output file since the results will be too much to copy the displayed resutls. In addition when i get no info found for a specific file e.g
-
Gene000055930
File : 1
No info found
File : 2
No info found
File : 3
No info found
-
Is there a way I can modify the File : 1 into No resutls from "Mutation point of view"
cheers
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hello All,
This is my first post on this forums, which I consider one of the best of its kind. The reason for my post is that I want to export some information form Nagios configuration files to a DB. I know that there are other tools available to do this, like NDO, monarch, etc... But I want to... (3 Replies)
Discussion started by: oconmx
3 Replies
2. UNIX for Advanced & Expert Users
i want to write a perl script that gets/displays all those files having multiple links (in current directory) (4 Replies)
Discussion started by: guptesanket
4 Replies
3. UNIX for Dummies Questions & Answers
hi everyone!
I already posted it in scripts, I'm sorry, it's doubled
I'd like to extract a single column from 5 different files and put them together in an output file. I saw a similar question for 2 input files, and the line of code workd very well, the code is:
awk 'NR==FNR{a=$2; next}... (1 Reply)
Discussion started by: orcaja
1 Replies
4. Shell Programming and Scripting
hi everyone!
I'd like to extract a single column from 5 different files and put them together in an output file. I saw a similar question for 2 input files, and the line of code workd very well, the code is:
awk 'NR==FNR{a=$2; next} {print a, $2}' file1 file2
I added the file3, file4 and... (10 Replies)
Discussion started by: orcaja
10 Replies
5. Shell Programming and Scripting
Hello,
I am new to unix and need help with a problem. I have 2 files each containing multiple columns of information ie;
File 1 :
A B C D E
1 2 3 4 5
File 2 :
F G
6 7
I would like to merge the information from File 2 to File 1 so that the data reads as follows;
File 1:
A... (4 Replies)
Discussion started by: crunchie
4 Replies
6. Shell Programming and Scripting
Hi Everyone,
I'm really new to all this so I'm really hoping someone can help. I have a directory with ~1000 lists from which I want to extract lines from and write to new files. For simplicity lets say they are shopping lists and I want to write out the lines corresponding to apples to a new... (2 Replies)
Discussion started by: born2phase
2 Replies
7. Shell Programming and Scripting
consider the following is the contents of the file
cat 11.sql
drop procedure if exists hoop1 ;
Delimiter $$
CREATE PROCEDURE hoop1(id int)
BEGIN
END
$$
Delimiter ;
.
.
.
.
drop procedure if exists hoop2;
Delimiter $$
CREATE PROCEDURE hoop2(id int)
BEGIN
END
$$ (8 Replies)
Discussion started by: vivek d r
8 Replies
8. Shell Programming and Scripting
hi everyone,
im stuck in here with shell :) can you help me??
i have a directory with alot files (genbank files ... all ended in .gbk ) more than 1000 for sure ... and i want to read each one of them and search for some information and if i found the right one i save in new file with new... (6 Replies)
Discussion started by: andreia
6 Replies
9. Shell Programming and Scripting
Hi,
Can somebody help me?
I am testing a demo with the given function
PATH525="/uscms/home/emily/READme/extra/data/"
TEMP=temp
FileName=DataFileName
CopyFiles() {
# PATHNAME="$paths" ... (9 Replies)
Discussion started by: emily
9 Replies
10. Shell Programming and Scripting
Hey,
I have number of .tgz files and want to extract the file with the ending *results.txt from each one.
I have tried
for file in *.tgz; do tar --wildcards -zxf $file *results.txt; doneas well as
list=$(ls *.tgz)
for i in $list; do tar --wildcards -zxvf $i *.results.txt; done... (1 Reply)
Discussion started by: jfern
1 Replies
LEARN ABOUT DEBIAN
file::fu
File::Fu(3pm) User Contributed Perl Documentation File::Fu(3pm)
NAME
File::Fu - file and directory objects
SYNOPSIS
The directory constructor:
use File::Fu;
my $dir = File::Fu->dir("bar");
print "$dir
"; # 'bar/'
my $file = $dir + 'bar.txt';
print "$file
"; # 'bar/bar.txt'
my $d2 = $dir % 'baz'; # 'barbaz/'
my $d3 = $dir / 'bat'; # 'bar/bat/'
my $file2 = $dir / 'bat' + 'foo.txt'; # 'bar/bat/foo.txt'
The file constructor:
my $file = File::Fu->file("foo");
$file->e and warn "$file exists";
$file->l and warn "$file is a link";
warn "file is in ", $file->dir;
ABOUT
This class provides the toplevel interface to File::Fu directory and file objects, with operator overloading which allows precise path
composition and support for most builtin methods, as well as creation of temporary files/directories, finding files, and more.
The interface and style are quite different than the perl builtins or File::Spec. The syntax is concise. Errors are thrown with croak(),
so you never need to check a return code.
Constructors
The actual objects are in the 'Dir' and 'File' sub-namespaces.
dir
my $dir = File::Fu->dir($path);
See "new" in File::Fu::Dir
file
my $file = File::Fu->file($path);
See "new" in File::Fu::File
Class Constants
tmp
Your system's '/tmp/' directory (or equivalent of that.)
my $dir = File::Fu->tmp;
home
User's $HOME directory.
my $dir = File::Fu->home;
program_name
The absolute name of your program. This will be relative from the time File::Fu was loaded. It dies if the name is '-e'.
my $prog = File::Fu->program_name;
If File::Fu was loaded after a chdir and the $0 was relative, calling program_name() throws an error. (Unless you set $0 correctly before
requiring File::Fu.)
program_dir
Returns what typically corresponds to program_name()->dirname, but just the compile-time cwd() when $0 is -e/-E.
my $dir = File::Fu->program_dir;
Class Methods
THIS_FILE
A nicer way to say __FILE__.
my $file = File::Fu->THIS_FILE;
cwd
The current working directory.
my $dir = File::Fu->cwd;
which
Returns File::Fu::File objects of ordered candidates for $name found in the path.
my @prog = File::Fu->which($name) or die "cannot find $name";
If called in scalar context, returns a single File::Fu::File object or throws an error if no candidates were found.
my $prog = File::Fu->which($name);
Temporary Directories and Files
These class methods call the corresponding File::Fu::Dir methods on the value of tmp(). That is, you get a temporary file/dir in the
'/tmp/' directory.
temp_dir
my $dir = File::Fu->temp_dir;
temp_file
my $handle = File::Fu->temp_file;
Subclassing
You may wish to subclass File:Fu and override the dir_class() and/or file_class() class methods to point to your own Dir/File subclasses.
my $class = 'My::FileFu';
my $dir = $class->dir("foo");
See File::Fu::File and File::Fu::Dir for more info.
See Also
File::Fu::why if I need to explain my motivations.
Path::Class, from which many an idea was taken.
File::stat, IO::File, File::Spec, File::Find, File::Temp, File::Path, File::Basename, perlfunc, perlopentut.
AUTHOR
Eric Wilhelm @ <ewilhelm at cpan dot org>
http://scratchcomputing.com/
BUGS
If you found this module on CPAN, please report any bugs or feature requests through the web interface at <http://rt.cpan.org>. I will be
notified, and then you'll automatically be notified of progress on your bug as I make changes.
If you pulled this development version from my /svn/, please contact me directly.
COPYRIGHT
Copyright (C) 2008 Eric L. Wilhelm, All Rights Reserved.
NO WARRANTY
Absolutely, positively NO WARRANTY, neither express or implied, is offered with this software. You use this software at your own risk. In
case of loss, no person or entity owes you anything whatsoever. You have been warned.
LICENSE
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.10.1 2010-05-13 File::Fu(3pm)