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Full Discussion: extracting information from multiple files
Top Forums Shell Programming and Scripting extracting information from multiple files Post 302571080 by houkto on Sunday 6th of November 2011 02:29:46 AM
Old 11-06-2011
Bug extracting information from multiple files
Hello there,

I am trying to extract (string) information ( a list words) from 4 files and then put the results into 1 file. Currently I am doing this using grep -f list.txt file1 . and repeat the process for the other 3 files. The reasons i am doing that (a) I do know how to code (b) each file has a header that must be include with the string (c) I have to put the word and underneath it the results from 4 files and if there is no results from one and/or all I need to write a specific sentence like there is no results from file No. Below I will explain what I am trying to achieve.

(1) The list.txt
Gene1
Gene2
Gene3

(2) file1.txt
Chromosome Position Genes Mutation
1 251565465 Gene1 T/G
1 215465511 Gene3 G/A

(3) file 2.txt
Chromosome Position Genes Protein
1 251565471 Gene1 Damaged
1 215465614 Gene2 Pass

(4) file 3 and file 4.txt with different results

I want get the results file from the list.txt in a text as the format below
---
Gene1
(add a sentence) "From Mutation point of view" or file name
Chromosome Position Genes Mutation
1 251565465 Gene1 T/G
(add a sentence) "From Protein point of view" or file name
Chromosome Position Genes Protein
1 251565471 Gene1 Damaged
(add a sentence) "There was No results from file 3 and 4" or file name
(a gap, the follow the list with the next word)
Gene2
(add a sentence) "No resultsFrom Mutation point of view" or file name
(add a sentence) "From Protein point of view" or file name
Chromosome Position Genes Protein
1 215465614 Gene2 Pass

---

Any suggestions ?
I searched for grep for multiple files on the forum but it seems that perl will be needed and I am not an expert in coding.
 

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LEARN ABOUT DEBIAN

ucto

ucto(1) 						      General Commands Manual							   ucto(1)

NAME

       ucto - Unicode Tokenizer

SYNOPSYS

       ucto [[options]] [input-file] [[output-file]]

DESCRIPTION

       ucto ucto tokenizes text files: it separates words from punctuation, splits sentences (and optionally paragraphs), and finds paired quotes.
       Ucto is preconfigured with tokenisation rules for several languages.

OPTIONS

       -c configfile
	      read settings from a file

       -d value
	      set debug mode to 'value'

       -e value
	      set input encoding. (default UTF8)

       -f
	      disable filtering of special characters

       -L language
	       Automatically selects a configuration file by language code.  e.g. 'fr' will select the file  tokconfig-fr  from  the  installation
	      directory

       -l
	      Convert to all lowercase

       -u
	      Convert to all uppercase

       -n
	      Assume one sentence per line on input

       -m
	      Emit one sentence per line on output

       --passthru
	      Don't tokenize, but perform input decoding and simple token role detection

       -P
	      Disable Paragraph Detection

       -Q
	      Enable Quote Detection. (this is experimental and may lead to unexpected results)

       -S
	      Disable Sentence Detection

       -s <string>
	      Set End-of-sentence marker. (Default <utt>)

       -V
	      Show version information

       -v
	      set Verbose mode

       -x <DocId>
	      Output FoLiA XML, use the specified Document ID. (this disables usage of most other options: -nulPQvsS)

       -F
	      Read a FoLiA XML document, tokenize it, and output the modified doc. (this disables usage of most other options: -nulPQvsS)

BUGS

       likely

AUTHORS

       Maarten van Gompel proycon@anaproy.nl

       Ko van der Sloot Timbl@uvt.nl

								 2011 november 28							   ucto(1)
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