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Full Discussion: extracting information from multiple files
Top Forums Shell Programming and Scripting extracting information from multiple files Post 302571080 by houkto on Sunday 6th of November 2011 02:29:46 AM
Old 11-06-2011
Bug extracting information from multiple files
Hello there,

I am trying to extract (string) information ( a list words) from 4 files and then put the results into 1 file. Currently I am doing this using grep -f list.txt file1 . and repeat the process for the other 3 files. The reasons i am doing that (a) I do know how to code (b) each file has a header that must be include with the string (c) I have to put the word and underneath it the results from 4 files and if there is no results from one and/or all I need to write a specific sentence like there is no results from file No. Below I will explain what I am trying to achieve.

(1) The list.txt
Gene1
Gene2
Gene3

(2) file1.txt
Chromosome Position Genes Mutation
1 251565465 Gene1 T/G
1 215465511 Gene3 G/A

(3) file 2.txt
Chromosome Position Genes Protein
1 251565471 Gene1 Damaged
1 215465614 Gene2 Pass

(4) file 3 and file 4.txt with different results

I want get the results file from the list.txt in a text as the format below
---
Gene1
(add a sentence) "From Mutation point of view" or file name
Chromosome Position Genes Mutation
1 251565465 Gene1 T/G
(add a sentence) "From Protein point of view" or file name
Chromosome Position Genes Protein
1 251565471 Gene1 Damaged
(add a sentence) "There was No results from file 3 and 4" or file name
(a gap, the follow the list with the next word)
Gene2
(add a sentence) "No resultsFrom Mutation point of view" or file name
(add a sentence) "From Protein point of view" or file name
Chromosome Position Genes Protein
1 215465614 Gene2 Pass

---

Any suggestions ?
I searched for grep for multiple files on the forum but it seems that perl will be needed and I am not an expert in coding.
 

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LEARN ABOUT SUNOS

verifier

verifier(1M)						    Application Server Utility						      verifier(1M)

NAME

       verifier - validates the J2EE Deployment Descriptors against application server DTDs

SYNOPSIS

       verifier [-v] [-d destination_directory] [-r [a|w|f]] jar_filename

       Use the verifier utility to validate the J2EE deployment descriptors and the Sun ONE Application Server specific deployment descriptors. If
       the application is not J2EE compliant, an error message is printed.

       When you run the verifier utility, two results files are created in XML and TXT format. The location where the files  are  created  can	be
       configured  using  the  -d  option.  The directory specified as the destination directory for result files should exist. If no directory is
       specified, the result files are created in the current directory. Result files are named as jar_filename_verified.xml and jar_filename_ver-
       ified.txt

       The  XML  file  has  various sections that are dynamically generated depending on what kind of application or module is being verified. The
       root tag is static-verification which may contain the tags application, ejb, web, appclient, connector, other, error and failure-count. The
       tags are self explanatory and are present depending on the type of module being verified. For example, an EAR file containing a web and EJB
       module will contain the tags application, ejb, web, other, and failure-count.

       If the verifier ran successfully, a result code of 0 is returned. A non-zero error code is returned if the verifier failed to run.

OPTIONS

       -v			verbose debugging is turned on.

       -d		       identifies where the result files get placed.

       -r		       identifies the reporting level defined as one of the following:

				 o  a sets output reporting level to display all results (default)

				 o  w sets output reporting level to display warning and failure results

				 o  f sets output reporting level to display only failure results

       jar_filename	       name of the ear/war/jar file to perform static verification on. The results of verification are placed in two files
			       jar_filename_verified.xml and jar_filename_verified.txt in the destination directory.

       Example 1: Using verifier in the Verbose Mode

       example% verifier -v -d /verifier-results -rf sample.ear

       Where  -v  runs	the  verifier in verbose mode, -d specifies the destination directory, and -rf displays only the failures. The results are
       stored in /verifier-results/sample.ear_verified.xml and /verifier-results/sample.ear_verified.txt.

       asadmin(1M)

Sun Java System Application Server				    March 2004							      verifier(1M)
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