I would like to read directories and assign to an array where the user can select a directory from the output. For example, a dir list will populate with a number assigned to each dir. I would like to ask the user to select the dir they want. TIA, I don't know what this would be called so I... (2 Replies)
Hi All
I want to search a string from an array in Perl. If a match occurs, assign that string to a variable else assign 'No match'. I tried writing the script as follows but it's in vain. Please help me..
#!/usr/bin/perl
use strict;
my $NER;
my @text=("ORG","PER");
... (4 Replies)
I need to use array elements while pattern matching.
@myarr = (ELEM1, ELEM2, ELEM3);
following is the statement which I am using in my code. Basically I want to replace the ELEM1/2/3 with other thing which is mentioned as REPL here.
if (condition) {
s/(ELEM1|ELEM2|ELEM3): REPL: /;
}
I... (3 Replies)
Hi,
I have one file in this format
20 value1
33 value2
56 value3
I have another file in this format:
34,30-SEP-09,57,100237775,33614510126,2,34
34,30-SEP-09,57,100237775,33620766654,2,34
34,30-SEP-09,108,100237775,33628458122,2,34
34,30-SEP-09,130,100237775,33635266741,2,254... (6 Replies)
Hi Everyone,
#!/usr/bin/perl
use strict;
use warnings;
my @test=("a;b;qqq;c;d","a;b;ggg;c;d","a;b;qqq;c;d");
would like to split the @test array into two array:
@test1=(("a;b;qqq;c;d","a;b;qqq;c;d"); and @test2=("a;b;ggg;c;d");
means search for 3rd filed.
Thanks
find the... (0 Replies)
#!/usr/bin/perl
my @arr=("hello", "how", "are", "you");
$l=length(@arr);
print $l;
This print 1.Why?
How can i print the array size = 4?
I want to store these in an array.
hello
how
are
you
And then i want to access these element through indexing.
How can i do this? (4 Replies)
Hi,
i have a txtfile with the format <Nr>tab<word>tab<other stuff>new line and i want to sort the <word>-colum with a perl script.
My textfile:
<Nr>tab<word>tab<other stuff>new line
6807 die ART.Acc.Sg.Fem
6426 der ART.Gen.Sg.Fem
2 die ART.Nom.Sg.Fem
87 auf APPR.--
486 nicht PTKNEG.--... (1 Reply)
Hello Guru's
I want to read an array into a flatfile
Please let me know how to do the same
So far this the below code
use strict;
use warnings;
open (my $data , '<', $ARGV)|| die "could not open $ARGV:\n$!";
my @array=(<$data>);
my @sorted=sort... (8 Replies)
HI I ma using perl programming
my perl is like this
$InputFile = $ENV{UDE_TMP} . "/" ."cre_fmr_gen.temp_data_file_gen.dat";
@duplicates = `cat $InputFile | cut -d "|" -f 1,1 | sort | uniq -c | awk '{ if(\$1>1) {print \$2;}}'`;
my $cusiplist ;
foreach $cusip (@duplicates)
{... (1 Reply)
Discussion started by: ptappeta
1 Replies
LEARN ABOUT DEBIAN
asn2xml
ASN2XML(1) NCBI Tools User's Manual ASN2XML(1)NAME
asn2xml - translate biological data from ASN.1 to XML
SYNOPSIS
asn2xml [-] [-b F] [-e] [-i filename] [-l filename] [-o filename] [-s]
DESCRIPTION
asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation. It differs from asn2asn -x in that
it converts packed sequence data back into human-readable ASCII text.
OPTIONS
A summary of options is included below.
- Print usage message
-b F Input asnfile in text mode
-e Input is a Seq-entry
-i filename
Read ASN.1 from filename (default is stdin)
-l filename
Log errors to filename (default is stderr)
-o filename
Write XML to filename (default is stdout)
-s Input is a Seq-submit
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2gb(1), asndhuff(1), gene2xml(1), /usr/share/doc/ncbi-tools-bin/README.asn2xml,
/usr/share/doc/libncbi6/ncbixml.txt.gz
NCBI 2005-05-16 ASN2XML(1)