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Top Forums UNIX for Dummies Questions & Answers merge files along with file names (awk)? Post 302570914 by wei.deng on Friday 4th of November 2011 04:21:12 PM
Old 11-04-2011
merge files along with file names (awk)?

Dear programmers,

I have a question about conditionally merging multiple files and having their file names in the first column.

Input files:
Code:
file.1.extension file.2.extension file.3.extension file.4.extension ... file.1000.extension

where each file looks like this (with multiple lines):
Code:
CHR         SNP         BP    NMISS       BETA       
  22   rs1006771          2      370    0.09654

The desired output is:

Code:
filename           CHR         SNP         BP    NMISS       BETA       
file.1.extension  22   rs1006771          2      370    0.09654   
file.2.extension  22   rs1490345          2      NA      0.04256
file.2.extension  22   rs1345544          2      NA      0.03245

I have tried using:

Code:
for i in `fileID`
do
awk '{if($5 < 0.01) printf $0"\n"}' file.${i}.extension >> betaout
done

which works perfectly, but does not give me the first column of my desired output.

And I tried put ${i} inside the awk command.... still not working (syntax error).

I guess, this is the point where I call for help desperately... So, please, HELP.

Wei

Last edited by radoulov; 11-04-2011 at 05:25 PM.. Reason: Code tags, please!
 

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Locale::Codes::LangFam(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangFam(3pm)

NAME
Locale::Codes::LangFam - standard codes for language extension identification SYNOPSIS
use Locale::Codes::LangFam; $lext = code2langfam('apa'); # $lext gets 'Apache languages' $code = langfam2code('Apache languages'); # $code gets 'apa' @codes = all_langfam_codes(); @names = all_langfam_names(); DESCRIPTION
The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in ISO 639-5. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5 language family codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lext = code2langfam('apa','alpha'); $lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA); The codesets currently supported are: alpha This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages. This is the default code set. ROUTINES
code2langfam ( CODE [,CODESET] ) langfam2code ( NAME [,CODESET] ) langfam_code2code ( CODE ,CODESET ,CODESET2 ) all_langfam_codes ( [CODESET] ) all_langfam_names ( [CODESET] ) Locale::Codes::LangFam::rename_langfam ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangFam::add_langfam ( CODE ,NAME [,CODESET] ) Locale::Codes::LangFam::delete_langfam ( CODE [,CODESET] ) Locale::Codes::LangFam::add_langfam_alias ( NAME ,NEW_NAME ) Locale::Codes::LangFam::delete_langfam_alias ( NAME ) Locale::Codes::LangFam::rename_langfam_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangFam::add_langfam_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangFam::delete_langfam_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.loc.gov/standards/iso639-5/id.php ISO 639-5 . AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.18.2 2013-11-04 Locale::Codes::LangFam(3pm)
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