10-28-2011
This works great, but I actually realize my mistake in writing that I wished to retain everything but the line with the second occurrence of the pattern. I would like to retain everything in the text file without the tag "RAGE", as well as the line with the second occurrence of "RAGE". So for example, this would be my ideal output:
5 T1AxialPremosaic ok 512 448 23 1 284000-000005-000001.dcm
6 T2_SPACE ok 256 256 176 1 465000-000006-000001.dcm
7 FLAIRmosaic ok 512 432 23 1 748000-000007-000001.dcm
8 T2_SPACE ok 256 256 1 171000-000008-000001.dcm
9 T2_SPACE ok 256 256 1 218000-000009-000001.dcm
32 T1AxialPostmosaic ok 512 448 23 1 836000-000032-000001.dcm
34 MEMPRAGE ok 256 256 176 1 767000-000034-000001.dcm
Any ideas on how to keep the rest of the file intact (except for lines with "RAGE")? Apologies for the follow-up here.
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LEARN ABOUT DEBIAN
gdcmtar
gdcmtar(1) GDCM gdcmtar(1)
NAME
gdcmtar - Concatenate/Extract DICOM files.
SYNOPSIS
gdcmtar [options] file-in file-out
DESCRIPTION
The gdcmtar is a command line tool used to tar/untar multi-frames images (including SIEMENS MOSAIC file)
PARAMETERS
file-in DICOM input filename
file-out DICOM output filename
options
options
--enhance enhance (default)
-U --unenhance unenhance
-M --mosaic Split SIEMENS Mosaic image into multiple frames.
-p --pattern Specify trailing file pattern.
--root-uid Root UID.
general options
-h --help
print this help text and exit
-v --version
print version information and exit
-V --verbose
verbose mode (warning+error).
-W --warning
warning mode, print warning information
-E --error
error mode, print error information
-D --debug
debug mode, print debug information
environment variable
GDCM_ROOT_UID Root UID
Typical usage
SIEMENS Mosaic
$ gdcminfo MR-sonata-3D-as-Tile.dcm
MediaStorage is 1.2.840.10008.5.1.4.1.1.4 [MR Image Storage]
TransferSyntax is 1.2.840.10008.1.2.1 [Explicit VR Little Endian]
NumberOfDimensions: 2
Dimensions: (384,384,1)
...
$ gdcmtar --mosaic -i MR-sonata-3D-as-Tile.dcm -o mosaic --pattern %03d.dcm
Will output:
-rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic000.dcm
-rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic001.dcm
-rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic002.dcm
-rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic003.dcm
-rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic004.dcm
-rw-r--r-- 1 mathieu mathieu 72886 2009-08-10 11:14 mosaic005.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic006.dcm
-rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic007.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic008.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic009.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic010.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic011.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic012.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic013.dcm
-rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic014.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic015.dcm
-rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic016.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic017.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic018.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic019.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic020.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic021.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic022.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic023.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic024.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic025.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic026.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic027.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic028.dcm
-rw-r--r-- 1 mathieu mathieu 72884 2009-08-10 11:14 mosaic029.dcm
-rw-r--r-- 1 mathieu mathieu 72882 2009-08-10 11:14 mosaic030.dcm
$ gdcminfo mosaic000.dcm
MediaStorage is 1.2.840.10008.5.1.4.1.1.4 [MR Image Storage]
TransferSyntax is 1.2.840.10008.1.2.1 [Explicit VR Little Endian]
NumberOfDimensions: 2
Dimensions: (64,64,1)
...
SEE ALSO
gdcmdump(1), gdcmraw(1), gdcminfo(1)
COPYRIGHT
Copyright (c) 2006-2011 Mathieu Malaterre
Version 2.2.0 Tue Feb 5 2013 gdcmtar(1)