10-21-2011
showq shows less active nodes as normal
Hi,
I am new in system administration. I observe that some nodes in our cluster
are not considered as active by showq:
22 active jobs 217 of 257 processors in use by local jobs (84.44%)
15 of 17 nodes active (88.24%)
but then I try to log into each of the nodes by ssh and they are working,
well at least I can log in.
Is there any command to know what is happening with the nodes
besides showq? I have tried
pbsnodes and it shows some nodes as exclusive and the others as free but none of
them as down.
We are running:
Red Hat Enterprise Linux Workstation release 6.1 of 64 bit.
thanks.
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LEARN ABOUT DEBIAN
ompi-clean
orte-clean(1) Open MPI orte-clean(1)
NAME
orte-clean - Cleans up any stale processes and files leftover from Open MPI jobs.
SYNOPSIS
orte-clean [--verbose]
mpirun --pernode [--host | --hostfile file] orte-clean [--verbose]
OPTIONS
[-v | --verbose] This argument will run the command in verbose mode and print out the universes that are getting cleaned up as well as pro-
cesses that are being killed.
DESCRIPTION
orte-clean attempts to clean up any processes and files left over from Open MPI jobs that were run in the past as well as any currently
running jobs. This includes OMPI infrastructure and helper commands, any processes that were spawned as part of the job, and any temporary
files. orte-clean will only act upon processes and files that belong to the user running the orte-clean command. If run as root, it will
kill off processes belonging to any users.
When run from the command line, orte-clean will attempt to clean up the local node it is run from. When launched via mpirun, it will clean
up the nodes selected by mpirun.
EXAMPLES
Example 1: Clean up local node only.
example% orte-clean
Example 2: To clean up on a specific set of nodes specified on command line, it is recommended to use the pernode option. This will run
one orte-clean for each node.
example% mpirun --pernode --host node1,node2,node3 orte-clean
To clean up on a specific set of nodes from a file.
example% mpirun --pernode --hostfile nodes_file orte-clean
Example 3: Within a resource managed environment like N1GE, SLURM, or Torque. The following example is from N1GE.
First, we see that we have two nodes with two CPUs each.
example% qsh -pe orte 4
example% mpirun -np 4 hostname
node1
node1
node2
node2
Clean up all the nodes in the cluster.
example% mpirun --pernode orte-clean
Clean up a subset of the nodes in the cluster.
example% mpirun --pernode --host node1 orte-clean
SEE ALSO
orterun(1), orte-ps(1)
1.4.5 Feb 10, 2012 orte-clean(1)