Hi,
I have these out put field seperator changed to "|" in my awk command, but it didn't give me the result.
Can someone help me find out why?
=======================================
/bin/awk 'BEGIN { OFS="|" } { print $0 }' list.tmp.$$ > listtmp.$$
=======================================... (1 Reply)
OFS is inbuild command in awk.
I have a file file.txt
abc : def : ghi
jkl : mno: pqr
stu : vwx :yzz
code i used:
awk -F ":" 'BEGIN {OFS="|"} {print $1,$2}' file.txt
output:
abc def
jkl mno
stu vwx
but as i have used OFS="|" and i am expecting output as:
abc | def
jkl... (4 Replies)
Hi All,
I have a comma seperated delimited file with 10 columns. I need to convert it into TAB seperated delimited file.
awk -F"," '{print $1"\t"$2"\t"$3"\t"$4"\t"$5"\t"$6"\t"$7"\t"$8"\t"$9"\t"$10}' a.txt >> b.txt
how to use OFS to get the same output. I have tried by googling, but it... (5 Replies)
Hi,
I am trying to parse regular XML file where I have to reduce number of decimal points in some xml elements. I am using following AWK command to achive that :
#!/bin/ksh
EDITCMD='BEGIN { FS = ""; OFS=FS }
{
if ( $3 ~ "*\\.*" && length(substr($3,1+index($3,"."))) == 15 ) {... (4 Replies)
Hi Im trying to tidy up the output of a who command when it writes to a log, everything I've tried doesnt seem to work though, any help would be massively appreciated. Im using the awk command to set the OFS as tab.
#!/bin/bash
who >> /export/home/tjmoore/logusers
awk -F 'BEGIN... (3 Replies)
Hi, Could anyone tell me what Im doing wrong here any help will be much appreciated
#!/bin/bash
ls -ltr /export/home/tjmoore > /export/home/tjmoore/log100
awk -F " " /export/home/tjmoore/log100 'BEGIN {OFS="\t";} {print $1,$2,$3,$4,$5,
$6,$7,$8,$9;}' > /export/home/tjmoore/log1001
I... (9 Replies)
Hello,
I have an issue with adding commas as delimiters in this scenario:
cat xtr3.rpl|head -5|awk 'BEGIN {OFS=","} {print $1,$2,$3,$4}'
Produces this output:
00530083,0000000471,000000000000.00,000000000000.00
00530085,0000000471,000000000000.00,000000000000.00... (10 Replies)
file:
sasa|asasa|asasa|asas
erer|Erer|rere|ererer
Output needed :
sasa:asasa:asasa:asas
erer:Erer:rere:ererer
Im getting output, when i use the $1,$2.
awk -F'|' 'BEGIN{OFS=":";} {print $1,$2; }' file
Output :
sasa:asasa
erer:Erer
But when i need the whole column, i... (5 Replies)
Hi ,
I am having a problem with my awk oneliner , which for some reason leaves the first two records
Input File
$ cat file1
A1:B1:C1:NoLimit
M1:M2:M3:Limit
A2:B2:C2,C3,C4,C5
A3:B3:C3,C4,C5,C6,C7Desired output
A1,B1,C1,NoLimit
M1,M2,M3,Limit
A2,B2,C2
,,,C3
,,,C4
,,,C5
A3,B3,C3... (5 Replies)
Bio::Factory::SequenceFactoryI(3pm) User Contributed Perl Documentation Bio::Factory::SequenceFactoryI(3pm)NAME
Bio::Factory::SequenceFactoryI - This interface allows for generic building of sequences in factories which create sequences (like SeqIO)
SYNOPSIS
# do not use this object directly it is an interface # get a Bio::Factory::SequenceFactoryI object like
use Bio::Seq::SeqFactory;
my $seqbuilder = Bio::Seq::SeqFactory->new('-type' => 'Bio::PrimarySeq');
my $seq = $seqbuilder->create(-seq => 'ACTGAT',
-display_id => 'exampleseq');
print "seq is a ", ref($seq), "
";
DESCRIPTION
A generic way to build Sequence objects via a pluggable factory. This reduces the amount of code that looks like
if( $type eq 'Bio::PrimarySeq' ) { ... }
elsif( $type eq 'Bio::Seq::RichSeq' ) { ... }
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason-at-bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
create
Title : create
Usage : my $seq = $seqbuilder->create(-seq => 'CAGT',
-id => 'name');
Function: Instantiates new Bio::PrimarySeqI (or one of its child classes)
This object allows us to genericize the instantiation of sequence
objects.
Returns : Bio::PrimarySeqI
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-display_id => $name
perl v5.14.2 2012-03-02 Bio::Factory::SequenceFactoryI(3pm)