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Top Forums Shell Programming and Scripting Using columns from 2 files and extracting string Post 302566193 by radoulov on Wednesday 19th of October 2011 05:56:34 PM
Old 10-19-2011
This is what I get with your files:

Code:
awk 'NR == FNR {
  f2[$1] = $2; next
  }
$1 in f2 {
  print $0, substr(f2[$1], $3 - $2, $4 - $3) 
  }' file2 file1

Code:
% awk 'NR == FNR {
  f2[$1] = $2; next
  }
$1 in f2 {
  print $0, substr(f2[$1], $3 - $2, $4 - $3)
  }' file2 file1
NAME   START     POS1  POS2   
N1          1234        1236    1237  B
N2          1245        1248    1250 GH

You may need to adjust the numbers Smilie

Or this:

Code:
% awk 'NR == FNR {
  f2[$1] = $2; next
  }
$1 in f2 {
  print $0, substr(f2[$1], $3 - $2 + 2, $4 - $3)           
  }' file2 file1                        
NAME   START     POS1  POS2   
N1          1234        1236    1237  D
N2          1245        1248    1250 BC

This User Gave Thanks to radoulov For This Post:
 

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mv(1)							      General Commands Manual							     mv(1)

Name
       mv - move or rename files

Syntax
       mv [-i] [-f] [-] file1 file2

       mv [-i] [-f] [-] file... directory

Description
       The command moves (changes the name of) file1 to file2.

       If  file2  already  exists,  it is removed before file1 is moved.  If file2 has a mode which forbids writing, prints the mode and reads the
       standard input to obtain a line.  If the line begins with y, the move takes place.  If it does not, exits.  For further information, see

       In the second form, one or more files (plain files or directories) are moved to the directory with their original file-names.

       The command refuses to move a file onto itself.

Options
       -		   Interprets all following arguments as file names to allow file names starting with a minus.

       -f		   Force. This option overrides any mode restrictions or the -i switch.

       -i		   Interactive mode.  If a move is to supersede an existing file, the system prompts youw with the name of the	file  fol-
			   lowed  by  a question mark.	If you type a string that begins with y, the move occurs.  If you type any other response,
			   the move does not occur.

Restrictions
       If file1 and file2 lie on different file systems, must copy the file and delete the original.  In this case the owner name becomes that	of
       the copying process and any linking relationship with other files is lost.

See Also
       cp(1), ln(1)

																	     mv(1)
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