10-14-2011
Quote:
Originally Posted by
birkhe
Hi tyler,
I used your instructions as follows:
C:\Perl>perl -F"\t" -lane 'BEGIN {@hdr = qw(chromo pos refalleles.SampleA refAllele.SampleA refCount.SampleA refFreq.SampleA altAllele.SampleA altCount.SampleA altFreq.SampleA alleles.SampleB refAllele.SampleB refCount.SampleB refFreq.SampleB altAllele.SampleB altCount.SampleB altFreq.SampleB alleles.SampleC refAllele.SampleC refCount.SampleC refFreq.SampleC altAllele.SampleC altCount.SampleC altFreq.SampleC alleles.SampleD refAllele.SampleD refCount.SampleD refFreq.SampleD altAllele.SampleD altCount.SampleD altFreq.SampleD)} $x{join"\t",@F[0..2]}.="\t".join"\t",@F[3..9]; { print join " ", @hdr; foreach $k (sort keys %x) {print "$k\t$x{$k}" if $k !~ /chromo/}}' samplea sampleb samplec sampled
But I get the following error message:
Can't find string terminator "'" anywhere before EOF at -e line 1.
C:\Perl>
Your code is unreadable, please reformat your code and use code tags.
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merge(1) merge(1)
NAME
merge - three-way file merge
SYNOPSIS
merge [-Llabel1 [-Llabel3]] [-p] [-q] file1 file2 file3
DESCRIPTION
merge incorporates all changes that lead from file2 to file3 into file1. The result goes to standard output if -p is present, into file1
otherwise. merge is useful for combining separate changes to an original. Suppose file2 is the original, and both file1 and file3 are
modifications of file2. Then merge combines both changes.
An overlap occurs if both file1 and file3 have changes in a common segment of lines. On a few older hosts where diff3 does not support the
-E option, merge does not detect overlaps, and merely supplies the changed lines from file3. On most hosts, if overlaps occur, merge out-
puts a message (unless the -q option is given), and includes both alternatives in the result. The alternatives are delimited as follows:
<<<<<<< file1 lines in file1 ======= lines in file3 >>>>>>> file3
If there are overlaps, the user should edit the result and delete one of the alternatives. If the -L label1 and -L label3 options are
given, the labels are output in place of the names file1 and file3 in overlap reports.
DIAGNOSTICS
Exit status is 0 for no overlaps, 1 for some overlaps, 2 for trouble.
IDENTIFICATION
Author: Walter F. Tichy.
Revision Number: 1.1.6.2; Release Date: 1993/10/07.
Copyright (C) 1982, 1988, 1989 by Walter F. Tichy.
Copyright (C) 1990, 1991 by Paul Eggert.
SEE ALSO
diff3(1), diff(1), rcsmerge(1), co(1)
merge(1)