merge multiple tables with perl Post: 302564551

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Top Forums Shell Programming and Scripting merge multiple tables with perl Post 302564551 by Franklin52 on Friday 14th of October 2011 02:28:21 AM

10-14-2011

Registered User

Quote:

Originally Posted by birkhe

Hi tyler,
I used your instructions as follows:
C:\Perl>perl -F"\t" -lane 'BEGIN {@hdr = qw(chromo pos refalleles.SampleA refAllele.SampleA refCount.SampleA refFreq.SampleA altAllele.SampleA altCount.SampleA altFreq.SampleA alleles.SampleB refAllele.SampleB refCount.SampleB refFreq.SampleB altAllele.SampleB altCount.SampleB altFreq.SampleB alleles.SampleC refAllele.SampleC refCount.SampleC refFreq.SampleC altAllele.SampleC altCount.SampleC altFreq.SampleC alleles.SampleD refAllele.SampleD refCount.SampleD refFreq.SampleD altAllele.SampleD altCount.SampleD altFreq.SampleD)} $x{join"\t",@F[0..2]}.="\t".join"\t",@F[3..9]; { print join " ", @hdr; foreach $k (sort keys %x) {print "$k\t$x{$k}" if $k !~ /chromo/}}' samplea sampleb samplec sampled

But I get the following error message:

Can't find string terminator "'" anywhere before EOF at -e line 1.

C:\Perl>

Your code is unreadable, please reformat your code and use code tags.

Franklin52

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LEARN ABOUT DEBIAN

freebsd-yyfix

YYFIX(1)						    BSD General Commands Manual 						  YYFIX(1)

NAME

     yyfix -- extract tables from y.tab.c

SYNOPSIS

     yyfix file [tables]

DESCRIPTION

     Programs have historically used a script (often named ``:yyfix'') to extract tables from the yacc(1) generated file y.tab.c.  As the names of
     the tables generated by the current version of yacc(1) are different from those of historical versions of yacc(1), the shell script yyfix is
     provided to simplify the transition.

     The first (and required) argument to yyfix is the name of the file where the extracted tables should be stored.

     If further command line arguments are specified, they are taken as the list of tables to be extracted.  Otherwise, yyfix attempts to deter-
     mine if the y.tab.c file is from an old or new yacc(1), and extracts the appropriate tables.

     The tables ``yyexca'', ``yyact'', ``yypact'', ``yypgo'', ``yyr1'', ``yyr2'', ``yychk'', and ``yydef'' are extracted from historical versions
     of yacc(1).

     The tables ``yylhs'', ``yylen'', ``yydefred'', ``yydgoto'', ``yysindex'', ``yyrindex'', ``yygindex'', ``yytable'', ``yyname'', ``yyrule'',
     and ``yycheck'', are extracted from the current version of yacc(1).

FILES

     y.tab.c  File from which tables are extracted.

SEE ALSO

     yacc(1)

HISTORY

     The yyfix command first appeared in 4.4BSD.

BSD
								  March 23, 1993							       BSD