Bio::PopGen::GenotypeI(3pm)				User Contributed Perl Documentation			       Bio::PopGen::GenotypeI(3pm)

NAME

       Bio::PopGen::GenotypeI - A marker and alleles for a specific individual

SYNOPSIS

       Give standard usage here

DESCRIPTION

       Describe the interface here

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via
       email or the web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich
       Email jason-at-bioperl.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   marker_name
	Title	: marker_name
	Usage	: my $name = $genotype->marker_name();
	Function: Get the marker name for a genotype result
	Returns : string
	Args	: none

   individual_id
	Title	: individual_id
	Usage	: my $indid = $genotype->individual_id();
	Function: Gets the individual id associated with a genotype
		  This is effectively a back reference since we will typically
		  associate a genotype with an individual with an
		  individual HAS-A genotype relationship.
	Returns : unique id string for an individual
	Args	: none

   annotation
	Title	: annotation
	Usage	: my $annotation_collection = $genotype->annotation;
	Function: Get/set a Bio::AnnotationCollectionI for this genotype
	Returns : Bio::AnnotationCollectionI object
	Args	: [optional set] Bio::AnnotationCollectionI object

   get_Alleles
	Title	: get_Alleles
	Usage	: my @alleles = $genotype->get_Alleles();
	Function: Get the alleles for a given marker and individual
	Returns : array of alleles (strings in many implementations)
	Args	: none

perl v5.14.2							    2012-03-02					       Bio::PopGen::GenotypeI(3pm)