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Top Forums Shell Programming and Scripting merge multiple tables with perl Post 302564343 by birkhe on Thursday 13th of October 2011 11:23:47 AM
Old 10-13-2011
Hi tyler,
I used your instructions as follows:
C:\Perl>perl -F"\t" -lane 'BEGIN {@hdr = qw(chromo pos refalleles.SampleA refAllele.SampleA refCount.SampleA refFreq.SampleA altAllele.SampleA altCount.SampleA altFreq.SampleA alleles.SampleB refAllele.SampleB refCount.SampleB refFreq.SampleB altAllele.SampleB altCount.SampleB altFreq.SampleB alleles.SampleC refAllele.SampleC refCount.SampleC refFreq.SampleC altAllele.SampleC altCount.SampleC altFreq.SampleC alleles.SampleD refAllele.SampleD refCount.SampleD refFreq.SampleD altAllele.SampleD altCount.SampleD altFreq.SampleD)} $x{join"\t",@F[0..2]}.="\t".join"\t",@F[3..9]; { print join " ", @hdr; foreach $k (sort keys %x) {print "$k\t$x{$k}" if $k !~ /chromo/}}' samplea sampleb samplec sampled

But I get the following error message:

Can't find string terminator "'" anywhere before EOF at -e line 1.

C:\Perl>
 

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Tk_GetJoinStyle(3)					       Tk Library Procedures						Tk_GetJoinStyle(3)

__________________________________________________________________________________________________________________________________________________

NAME
Tk_GetJoinStyle, Tk_NameOfJoinStyle - translate between strings and join styles SYNOPSIS
#include <tk.h> int Tk_GetJoinStyle(interp, string, joinPtr) const char * Tk_NameOfJoinStyle(join) ARGUMENTS
Tcl_Interp *interp (in) Interpreter to use for error reporting. const char *string (in) String containing name of join style: one of "bevel", "miter", or "round". int *joinPtr (out) Pointer to location in which to store X join style corresponding to string. int join (in) Join style: one of JoinBevel, JoinMiter, JoinRound. _________________________________________________________________ DESCRIPTION
Tk_GetJoinStyle places in *joinPtr the X join style corresponding to string, which will be one of JoinBevel, JoinMiter, or JoinRound. Join styles are typically used in X graphics contexts to indicate how adjacent line segments should be joined together. See the X documentation for information on what each style implies. Under normal circumstances the return value is TCL_OK and interp is unused. If string does not contain a valid join style or an abbrevia- tion of one of these names, then an error message is stored in interp->result, TCL_ERROR is returned, and *joinPtr is unmodified. Tk_NameOfJoinStyle is the logical inverse of Tk_GetJoinStyle. Given a join style such as JoinBevel it returns a statically-allocated string corresponding to join. If join is not a legal join style, then "unknown join style" is returned. KEYWORDS
bevel, join style, miter, round Tk Tk_GetJoinStyle(3)
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