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Top Forums Shell Programming and Scripting merge multiple tables with perl Post 302564343 by birkhe on Thursday 13th of October 2011 11:23:47 AM
Old 10-13-2011
Hi tyler,
I used your instructions as follows:
C:\Perl>perl -F"\t" -lane 'BEGIN {@hdr = qw(chromo pos refalleles.SampleA refAllele.SampleA refCount.SampleA refFreq.SampleA altAllele.SampleA altCount.SampleA altFreq.SampleA alleles.SampleB refAllele.SampleB refCount.SampleB refFreq.SampleB altAllele.SampleB altCount.SampleB altFreq.SampleB alleles.SampleC refAllele.SampleC refCount.SampleC refFreq.SampleC altAllele.SampleC altCount.SampleC altFreq.SampleC alleles.SampleD refAllele.SampleD refCount.SampleD refFreq.SampleD altAllele.SampleD altCount.SampleD altFreq.SampleD)} $x{join"\t",@F[0..2]}.="\t".join"\t",@F[3..9]; { print join " ", @hdr; foreach $k (sort keys %x) {print "$k\t$x{$k}" if $k !~ /chromo/}}' samplea sampleb samplec sampled

But I get the following error message:

Can't find string terminator "'" anywhere before EOF at -e line 1.

C:\Perl>
 

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GIT-MERGETOOL--LIB(1)						    Git Manual						     GIT-MERGETOOL--LIB(1)

NAME
git-mergetool--lib - Common git merge tool shell scriptlets SYNOPSIS
TOOL_MODE=(diff|merge) . "$(git --exec-path)/git-mergetool--lib" DESCRIPTION
This is not a command the end user would want to run. Ever. This documentation is meant for people who are studying the Porcelain-ish scripts and/or are writing new ones. The git-mergetool--lib scriptlet is designed to be sourced (using .) by other shell scripts to set up functions for working with git merge tools. Before sourcing git-mergetool--lib, your script must set TOOL_MODE to define the operation mode for the functions listed below. diff and merge are valid values. FUNCTIONS
get_merge_tool returns a merge tool. get_merge_tool_cmd returns the custom command for a merge tool. get_merge_tool_path returns the custom path for a merge tool. run_merge_tool launches a merge tool given the tool name and a true/false flag to indicate whether a merge base is present. $MERGED, $LOCAL, $REMOTE, and $BASE must be defined for use by the merge tool. AUTHOR
Written by David Aguilar <davvid@gmail.com[1]> DOCUMENTATION
Documentation by David Aguilar and the git-list <git@vger.kernel.org[2]>. GIT
Part of the git(1) suite NOTES
1. davvid@gmail.com mailto:davvid@gmail.com 2. git@vger.kernel.org mailto:git@vger.kernel.org Git 1.7.1 07/05/2010 GIT-MERGETOOL--LIB(1)
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