10-12-2011
Merging sideways
Hi birei,
currently your script merges the files in a vertical fashion:
chromo pos ref alleles.SampleA refAllele.SampleA refCount.SampleA refFreq.SampleA altAllele.SampleA altCount.SampleA altFreq.SampleA alleles.SampleB refAllele.SampleB refCount.SampleB refFreq.SampleB altAllele.SampleB altCount.SampleB altFreq.SampleB alleles.SampleC refAllele.SampleC refCount.SampleC refFreq.SampleC altAllele.SampleC altCount.SampleC altFreq.SampleC alleles.SampleD refAllele.SampleD refCount.SampleD refFreq.SampleD altAllele.SampleD altCount.SampleD altFreq.SampleD file 1
file 1
.
.
.
file 2
file 2 file 2 and so on....
I was wondering is there an easy way where the fields from file 2 are listed next to that of file 1?
If there is an easy fix to this that would be super wonderful. Thanks.
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LEARN ABOUT DEBIAN
flow-merge
flow-merge(1) General Commands Manual flow-merge(1)
NAME
flow-merge -- Merge flow files.
SYNOPSIS
flow-merge [-aghm] [-b big|little] [-C comment] [-d debug_level] [-o filename] [-z z_level] [file|directory ...]
DESCRIPTION
The flow-merge utility processes files and/or directories of files in the flow-tools format. The resulting merged data set is written to
the standard output or file specified by -o. If file is a single dash (`-') or absent, flow-merge will read from the standard input.
Unlike flow-cat, flow-merge interleaves flow records preserving the relative chronological order.
OPTIONS
-a Do not ignore filenames that begin with tmp.
-b big|little
Byte order of output.
-C Comment
Add a comment.
-d debug_level
Enable debugging.
-g Sort file list by capture start time before processing.
-h Display help.
-m Disable the use of mmap().
-p Preload headers. Use to preserve meta information such as lost flows.
-o file Write to file instead of the standard out.
-z z_level
Configure compression level to z_level. 0 is disabled (no compression), 9 is highest compression.
file|directory...
Process the files and/or directory.
EXAMPLES
Merge all flow files begining with ft-v05.2001-05.01, use flow-print to display the results.
flow-merge ft-v05.2001-05-01.* | flow-print
BUGS
None known.
AUTHOR
Larry Lidz ellidz@eridu.uchicago.edu
SEE ALSO
flow-tools(1)
flow-merge(1)