Sponsored Content
Top Forums Shell Programming and Scripting awk compare 2 columns, 2 files, output whole line Post 302561212 by jm4smtddd on Monday 3rd of October 2011 02:06:29 PM
Old 10-03-2011
awk compare 2 columns, 2 files, output whole line

Hello,

I have not been able to find what I'm looking for via searching the forum. I could use some help with an awk script or one-liner to solve this simple problem.

I have two files. If $1 and $2 from file1 match $1 and $2 from file2, print the whole line from file2.

Example file1

Code:
-47.2 -19.0 18.12 13.78 0.36 0.56 0.001 ABPO
-38.8 9.0 24.02 18.91 0.41 0.48 0.001 ADIS
-0.5 38.3 19.06 16.84 0.29 0.12 0.003 ALAC

Example file2

Code:
-38.8 9.0 -1.78172 11.3782 0.01 0.01 0.01 31704
-0.5 38.3 -1.83964 11.2841 0.01 0.01 0.01 31701
-2.3 37.6 -1.82152 11.3152 0.01 0.01 0.01 31702
-47.2 -19.0 -1.80205 11.3466 0.01 0.01 0.01 31703
-2 37.6 -1.76099 11.41 0.01 0.01 0.01 31705
29.9 31.2 -1.7402 11.4417 0.01 0.01 0.01 31706

Output should be:

Code:
-47.2 -19.0 -1.80205 11.3466 0.01 0.01 0.01 31703
-38.8 9.0 -1.78172 11.3782 0.01 0.01 0.01 31704
-0.5 38.3 -1.83964 11.2841 0.01 0.01 0.01 31701


Thanks so much for your help.
Moderator's Comments:
Mod Comment
Please use code tags when posting data and code samples!

Last edited by vgersh99; 10-03-2011 at 03:22 PM.. Reason: code tags, please
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

compare columns from seven files and print the output

Hi guys, I need some help to come out with a solution . I have seven such files but I am showing only three for convenience. filea a5 20 a8 16 fileb a3 42 a7 14 filec a5 23 a3 07 The output file shoud contain the data in table form showing first field of... (7 Replies)
Discussion started by: smriti_shridhar
7 Replies

2. Shell Programming and Scripting

Compare selected columns of two files and print whole line with mismatch

hi! i researched about comparing two columns here and got an answer. but after examining my two files, i found out that the first columns of the two files are not unique with each other. all i want to compare is the 2nd and 3rd column. FILE 1: ABS 456 315 EBS 923 163 JYQ3 654 237 FILE 2:... (1 Reply)
Discussion started by: engr.jay
1 Replies

3. Shell Programming and Scripting

AWK Compare files, different fields, output

Hi All, Looking for a quick AWK script to output some differences between two files. FILE1 device1 1.1.1.1 PINGS device1 2.2.2.2 PINGS FILE2 2862 SITE1 device1-prod 1.1.1.1 icmp - 0 ... (4 Replies)
Discussion started by: stacky69
4 Replies

4. Shell Programming and Scripting

Compare two files and output difference, by first field using awk.

It seems like a common task, but I haven't been able to find the solution. vitallog.txt 1310,John,Hancock 13211,Steven,Mills 122,Jane,Doe 138,Thoms,Doe 1500,Micheal,May vitalinfo.txt 12122,Jane,Thomas 122,Janes,Does 123,Paul,Kite **OUTPUT** vitalfiltered.txt 12122,Jane,Thomas... (2 Replies)
Discussion started by: charles33
2 Replies

5. Shell Programming and Scripting

awk compare specific columns from 2 files, print new file

Hello. I have two files. FILE1 was extracted from FILE2 and modified thanks to help from this post. Now I need to replace the extracted, modified lines into the original file (FILE2) to produce the FILE3. FILE1 1466 55.27433 14.72050 -2.52E+03 3.00E-01 1.05E+04 2.57E+04 1467 55.27433... (1 Reply)
Discussion started by: jm4smtddd
1 Replies

6. Shell Programming and Scripting

Compare intervals (columns) from two files (awk, grep, Perl?)

Hi dear users, I need to compare numeric columns in two files. These files have the following structure. K.txt (4 columns) A001 chr21 9805831 9846011 A002 chr21 9806202 9846263 A003 chr21 9887188 9988593 A003 chr21 9887188 ... (2 Replies)
Discussion started by: jcvivar
2 Replies

7. Shell Programming and Scripting

Compare columns in two different files using awk

Hi, I want to compare the columns of two files excluding column 2 from both the files. I tried this awk command. awk -F":" 'NR==FNR{++a;next} !(a)' file1.txt file2.txt . Example: File1.txt 123:09-15-2011:abc:123456 123:09-15-2011:abc:234567 123:09-15-2011:abc:345678 ... (5 Replies)
Discussion started by: shell_newbie
5 Replies

8. Shell Programming and Scripting

Compare columns of multiple files and print those unique string from File1 in an output file.

Hi, I have multiple files that each contain one column of strings: File1: 123abc 456def 789ghi File2: 123abc 456def 891jkl File3: 234mno 123abc 456def In total I have 25 of these type of file. (5 Replies)
Discussion started by: owwow14
5 Replies

9. Shell Programming and Scripting

[Solved] awk compare two different columns of two files and print all from both file

Hi, I want to compare two columns from file1 with another two column of file2 and print matched and unmatched column like this File1 1 rs1 abc 3 rs4 xyz 1 rs3 stu File2 1 kkk rs1 AA 10 1 aaa rs2 DD 20 1 ccc ... (2 Replies)
Discussion started by: justinjj
2 Replies

10. Shell Programming and Scripting

Compare 2 columns of files awk

hello everybody I have 2 files the file1 has 10 columns and the form: ... 110103 0802 1.16 38 20.16 22 1.21 8.77 0.00 20 120103 0832 23.40 38 22.10 21 46.35 10.17 0.00 28 120103 1413 45.00 38 24.50 21 48.85 7.89 0.00 38 130103 1112 23.40 38 22.10 21 48.85 ... (5 Replies)
Discussion started by: phaethon
5 Replies
A2P(1)							 Perl Programmers Reference Guide						    A2P(1)

NAME
a2p - Awk to Perl translator SYNOPSIS
a2p [options] [filename] DESCRIPTION
A2p takes an awk script specified on the command line (or from standard input) and produces a comparable perl script on the standard output. OPTIONS Options include: -D<number> sets debugging flags. -F<character> tells a2p that this awk script is always invoked with this -F switch. -n<fieldlist> specifies the names of the input fields if input does not have to be split into an array. If you were translating an awk script that processes the password file, you might say: a2p -7 -nlogin.password.uid.gid.gcos.shell.home Any delimiter can be used to separate the field names. -<number> causes a2p to assume that input will always have that many fields. -o tells a2p to use old awk behavior. The only current differences are: o Old awk always has a line loop, even if there are no line actions, whereas new awk does not. o In old awk, sprintf is extremely greedy about its arguments. For example, given the statement print sprintf(some_args), extra_args; old awk considers extra_args to be arguments to "sprintf"; new awk considers them arguments to "print". "Considerations" A2p cannot do as good a job translating as a human would, but it usually does pretty well. There are some areas where you may want to examine the perl script produced and tweak it some. Here are some of them, in no particular order. There is an awk idiom of putting int() around a string expression to force numeric interpretation, even though the argument is always integer anyway. This is generally unneeded in perl, but a2p can't tell if the argument is always going to be integer, so it leaves it in. You may wish to remove it. Perl differentiates numeric comparison from string comparison. Awk has one operator for both that decides at run time which comparison to do. A2p does not try to do a complete job of awk emulation at this point. Instead it guesses which one you want. It's almost always right, but it can be spoofed. All such guesses are marked with the comment ""#???"". You should go through and check them. You might want to run at least once with the -w switch to perl, which will warn you if you use == where you should have used eq. Perl does not attempt to emulate the behavior of awk in which nonexistent array elements spring into existence simply by being referenced. If somehow you are relying on this mechanism to create null entries for a subsequent for...in, they won't be there in perl. If a2p makes a split line that assigns to a list of variables that looks like (Fld1, Fld2, Fld3...) you may want to rerun a2p using the -n option mentioned above. This will let you name the fields throughout the script. If it splits to an array instead, the script is probably referring to the number of fields somewhere. The exit statement in awk doesn't necessarily exit; it goes to the END block if there is one. Awk scripts that do contortions within the END block to bypass the block under such circumstances can be simplified by removing the conditional in the END block and just exiting directly from the perl script. Perl has two kinds of array, numerically-indexed and associative. Perl associative arrays are called "hashes". Awk arrays are usually translated to hashes, but if you happen to know that the index is always going to be numeric you could change the {...} to [...]. Iteration over a hash is done using the keys() function, but iteration over an array is NOT. You might need to modify any loop that iterates over such an array. Awk starts by assuming OFMT has the value %.6g. Perl starts by assuming its equivalent, $#, to have the value %.20g. You'll want to set $# explicitly if you use the default value of OFMT. Near the top of the line loop will be the split operation that is implicit in the awk script. There are times when you can move this down past some conditionals that test the entire record so that the split is not done as often. For aesthetic reasons you may wish to change index variables from being 1-based (awk style) to 0-based (Perl style). Be sure to change all operations the variable is involved in to match. Cute comments that say "# Here is a workaround because awk is dumb" are passed through unmodified. Awk scripts are often embedded in a shell script that pipes stuff into and out of awk. Often the shell script wrapper can be incorporated into the perl script, since perl can start up pipes into and out of itself, and can do other things that awk can't do by itself. Scripts that refer to the special variables RSTART and RLENGTH can often be simplified by referring to the variables $`, $& and $', as long as they are within the scope of the pattern match that sets them. The produced perl script may have subroutines defined to deal with awk's semantics regarding getline and print. Since a2p usually picks correctness over efficiency. it is almost always possible to rewrite such code to be more efficient by discarding the semantic sugar. For efficiency, you may wish to remove the keyword from any return statement that is the last statement executed in a subroutine. A2p catches the most common case, but doesn't analyze embedded blocks for subtler cases. ARGV[0] translates to $ARGV0, but ARGV[n] translates to $ARGV[$n-1]. A loop that tries to iterate over ARGV[0] won't find it. ENVIRONMENT
A2p uses no environment variables. AUTHOR
Larry Wall <larry@wall.org> FILES
SEE ALSO
perl The perl compiler/interpreter s2p sed to perl translator DIAGNOSTICS
BUGS
It would be possible to emulate awk's behavior in selecting string versus numeric operations at run time by inspection of the operands, but it would be gross and inefficient. Besides, a2p almost always guesses right. Storage for the awk syntax tree is currently static, and can run out. perl v5.12.5 2012-10-11 A2P(1)
All times are GMT -4. The time now is 01:06 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy