09-27-2011
Hi All Gurus,
I am still unable to solve this problem and expert advise will really help.
Thanks.
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I still have to enter the password when I want to auto login w/o having to do any command line entry. This code works but I don't want to have to enter the password at the command line. After manning ssh I still am not sure what settings I need to change. Please help. Thanks!
<<<output>>>... (4 Replies)
Discussion started by: tekline
4 Replies
2. Shell Programming and Scripting
i want to connect to a remote server through ssh.
i have to also provide password within that script.
after connecting to the remote server i want to do some operations like grep,cd etc
can u pls help me to wite a script.
Thanks (1 Reply)
Discussion started by: millan
1 Replies
3. Shell Programming and Scripting
I'm working on a script (mostly for practice) to simplify a task I have to do every now and then. I have a cluster with 6 servers on it, each server has a directory with a set of files called *.pid and *.mpid. Each file contains the pid of a process that may or may not be running on that server.... (3 Replies)
Discussion started by: DeCoTwc
3 Replies
4. Shell Programming and Scripting
OS~AIX 6.1
I'm running an interactive shell script i.e.,waits for a user response a few times while executing, after doing ssh to a AIX server. I'm just wondering what options I have if the ssh connection to the server is lost while executing the script, do I have to run the script again, which in... (2 Replies)
Discussion started by: mbak
2 Replies
5. Shell Programming and Scripting
Hi All,
I need to prepare a script.
Description:
Currently i am in server "x(ubuntu os)", here i need to develop a script to ssh to another server "y(ubuntu os)", i have password less authentication to "y". i have done the below
#!/bin/bash
#ssh to the server "y" and confirming i am... (2 Replies)
Discussion started by: kumar85shiv
2 Replies
6. UNIX for Dummies Questions & Answers
I'm having a brain freeze moment. I've created a ksh script in AIX that ssh's to a remote server, executes some commands, and then logs out. All of this is sent to a file. I then have the script cat the file so i can see the output. Even though the cat command is outside of the remote session part;... (5 Replies)
Discussion started by: seekryts15
5 Replies
7. Ubuntu
Hello,
What I want to do is to run a file on remote server by running a script at localhost but script should not ask ssh password of my remote server when script is executed.
Scenario1:
To copy files from server2 to data server:$ scp -r root@server2_ip:/var/www/html/*.* /var/
When I enter... (6 Replies)
Discussion started by: baris35
6 Replies
8. Shell Programming and Scripting
I have a script, which connecting to remote server and first checks, if the files are there by timestamp. If not I want the script exit without error. Below is a code
TARFILE=${NAME}.tar
TARGZFILE=${NAME}.tar.gz
ssh ${DESTSERVNAME} 'cd /export/home/iciprod/download/let/monthly;... (3 Replies)
Discussion started by: digioleg54
3 Replies
9. UNIX for Beginners Questions & Answers
How to execute setDomainEnv.sh in wblogic via ssh on remote server in shell script
we execute setDomainEnv.sh manually as . ./setDomainEnv.sh from its location ie /opt/SP/users/domian/bin"
My approach is not working.
Please advise.
#!/bin/bash
set -x
base="/opt/SP/users/d1/bin"... (5 Replies)
Discussion started by: abhaydas
5 Replies
10. UNIX for Beginners Questions & Answers
I have googled this and found many solutions, but none of them are working for me. I am in a korn shell, most others reference bsh, maybe that is the issue? Anyway, all I am trying to do is use a variable I have declared in my main script in a remote shell I am running through ssh.
So I have a... (8 Replies)
Discussion started by: DJR
8 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)
NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)