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Top Forums Shell Programming and Scripting For loop to run external program Post 302557598 by oldmanwinter on Wednesday 21st of September 2011 04:41:56 PM
Old 09-21-2011
Thank you, except now it says "line 5: vina: command not found" if I change the code to
Code:
#!/bin/bash
FILES=/home/afalk/Desktop/battest/*.pdbqt
for f in $FILES 
do
$vina --config /home/afalk/Desktop/A.txt --ligand "$f".pdbqt
done

it returns "line 5: --config: command not found" config is an internal command for vina.
 

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gphoto2-port-config(1)						   User Commands					    gphoto2-port-config(1)

NAME
gphoto2-port-config - return meta information about installed version of libgphoto2_port(3). SYNOPSIS
gphoto2-port-config [--prefix=DIR] [--libs] [--cflags] [--help] [--version] DESCRIPTION
gphoto2-port-config is a convenience script which retrieves information about the installed version of libgphoto2_port(3) on your system. gphoto2-port-config is typically used to compile and link against libgphoto2_port(3). The following example shows how to use gphoto2-port- config in a Makefile: program: program.c cc program.c `gphoto2-port-config --cflags --libs` The output is similar to that produced by pkg-config(1). OPTIONS
The following options are supported: --cflags Prints pre-processor and compile flags required to compile with libgphoto2_port(3) on the command line. --help Displays help and usage information. --libs Identical to --cflags option but only prints the link flags. --prefix=DIR Specify a different prefix from the default libgphoto2_port(3). (default is/usr). --version Displays version of libgphoto2_port(3) installed on your system. FILES
The following files are used by this application: /usr/bin/gphoto2-port-coExecutable for installed library helper script ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +-----------------------------+-----------------------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | +-----------------------------+-----------------------------+ |Availability |SUNWgnome-camera-devel | +-----------------------------+-----------------------------+ |Interface stability |Volatile | +-----------------------------+-----------------------------+ SEE ALSO
attributes(5), pkg-config(1), libgphoto2_port(3) NOTES
Written by Matt Keenan Sun Microsystems Inc., 2008. SunOS 5.11 01 Aug 2008 gphoto2-port-config(1)
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