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Top Forums Shell Programming and Scripting For loop to run external program Post 302557598 by oldmanwinter on Wednesday 21st of September 2011 04:41:56 PM
Old 09-21-2011
Thank you, except now it says "line 5: vina: command not found" if I change the code to
Code:
#!/bin/bash
FILES=/home/afalk/Desktop/battest/*.pdbqt
for f in $FILES 
do
$vina --config /home/afalk/Desktop/A.txt --ligand "$f".pdbqt
done

it returns "line 5: --config: command not found" config is an internal command for vina.
 

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MICRODC(1)						      General Commands Manual							MICRODC(1)

NAME
microdc - A command-line based Direct Connect client SYNOPSIS
microdc [OPTION]... DESCRIPTION
microdc is a command-line based Direct Connect client that uses the GNU Readline library for user interaction. It was developed from ground up and does not depend on any other program. Despite the command-line user interface, microdc was designed to be user friendly and simple to use. OPTIONS
This program follows the usual GNU command line syntax, with long options starting with two dashes (`--'). -c, --config=FILE Read configuration script from FILE rather than ~/.microdc/config. -n, --no-config Do not read config file on startup. --help Show summary of options. --version Output version information and exit. --filelist_refresh_interval=NUMBER Local filelist refresh interval (in seconds). If set to zero, program runs in a special slave mode: it never updates the file list, just checks every minute if the filelist changes, and if so - reads it. This is pretty useful if you connect to several hubs and use same filelist. FILES
The following files are used by microdc (~ represents the current user's home directory): ~/.microdc/config This file is loaded on startup. It contains commands, one per line, that will be executed on startup. You can override loading of this file with --config and --no-config. ~/.microdc/history This is the command history file. It contains a list of commands that were typed and executed from the microdc prompt. It can safely be removed. REPORTING BUGS
Report bugs to <oskar@osk.mine.nu>. AUTHOR
The author of microdc and this manual page is Oskar Liljeblad <oskar@osk.mine.nu>. COPYRIGHT
Copyright (C) 2004, 2005 Oskar Liljeblad This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICU- LAR PURPOSE. microdc September 17, 2005 MICRODC(1)
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