You nearly had it! You didn't put a ; or newline before the 'do', though.
You don't need to put the filenames in a variable. That could actually be bad -- $FILES will split "file name.pdbgt file2.pdbgt" into "file", "name.pdbgt", "file2.pdbgt". "for FILE in *" won't.
You also don't need to put the ".pdbgt" back on the end, it never left
Code:
#!/bin/bash
for f in /home/afalk/Desktop/battest/*.pdbqt
do
vina --config /home/afalk/Desktop/A.txt --ligand "$f"
done
This code is in my 'case' statement and it all else works fine.
The problem I have is that the value in 'procno' is not passed on to the external program (fireit).
It is passing all zeros instead of the actual process number.
By the time I get to this case statement, I know the "Number" and... (1 Reply)
Hi,
I have a program in /opt/local/bin, my path in my .profile is
export PATH=/opt/local/bin:/opt/local/sbin:$PATH
however when i type the program name it cannot find it, however i know the program is in /opt/local/bin?
Thanks (2 Replies)
Hello
I am getting error when the file (Folder or Application) path having space is given as external input to the shell program.
It works fine for the files which has no spaces in the file name
Thans, (5 Replies)
Hello,
in the application i'm writing i need to launch "recordmydesktop" to capture the screen,but i'm having a problem: when the recording stops,and the encoding of the saved file starts,the entire system hangs until the completion of the encoding.This happens if i launch recordmydesktop from my... (7 Replies)
Hi,
in my program i need to run an external program in background.I am aware that there are at least 2 alternatives for this:
1)fork+exec
2)system("program &");
I have read several posts about this,and they all tend to suggest to use fork+exec (and that's what i am doing now).
I have some... (2 Replies)
Sorry for such a dreadful title, but I'm not sure how to be more descriptive. I'm hoping some of the more gurutastic out there can take a look at a solution I came up with to a problem, and advice if there are better ways to have gone about it.
To make a long story short around 20K pieces of... (2 Replies)
I have asked this before but I haven't had any luck so far getting this to work. I use RCS(revision control system). When it runs if I pass the value 'unlock' to $3 its reassigned to $unlock. When I run the command (rcs -u'version number' 'filename') ti will ask me 1-(Do you want to break the lock... (5 Replies)
Hi all,
I am using an external binary to view memory starting from a specific address and i want to automate this via PERL however there are problems. Hope you can help me ..thx
The output of the programme is like below:
bash-3.2$ mem_disp 12B21D20 100
Opening RO Data Memory File scp.ro... (4 Replies)
Hi,
I have created a Shell Script and invoke through java using Process Builder
It's working fine, if (Shell script file ) in the same directory as java file.
By Problem:
How to run the Shell Script file( resides in external directory) using java. What configuration i have... (1 Reply)
Dear community,
I communicate with an external program (maxima) using named pipes. If I use a text file to capture the output (maxima > out.txt) i can see the programs answer directly after the input written into the file. But if bypass the output into a named pipe (maxima > pipe) and capture it... (1 Reply)
Discussion started by: Pustekuchen
1 Replies
LEARN ABOUT CENTOS
xzcmp
XZDIFF(1) XZ Utils XZDIFF(1)NAME
xzcmp, xzdiff, lzcmp, lzdiff - compare compressed files
SYNOPSIS
xzcmp [cmp_options] file1 [file2]
xzdiff [diff_options] file1 [file2]
lzcmp [cmp_options] file1 [file2]
lzdiff [diff_options] file1 [file2]
DESCRIPTION
xzcmp and xzdiff invoke cmp(1) or diff(1) on files compressed with xz(1), lzma(1), gzip(1), bzip2(1), or lzop(1). All options specified
are passed directly to cmp(1) or diff(1). If only one file is specified, then the files compared are file1 (which must have a suffix of a
supported compression format) and file1 from which the compression format suffix has been stripped. If two files are specified, then they
are uncompressed if necessary and fed to cmp(1) or diff(1). The exit status from cmp(1) or diff(1) is preserved.
The names lzcmp and lzdiff are provided for backward compatibility with LZMA Utils.
SEE ALSO cmp(1), diff(1), xz(1), gzip(1), bzip2(1), lzop(1), zdiff(1)BUGS
Messages from the cmp(1) or diff(1) programs refer to temporary filenames instead of those specified.
Tukaani 2011-03-19 XZDIFF(1)
09-21-2011
You didn't put a ; or newline before the 'do', though.