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Top Forums Shell Programming and Scripting Help with generating a script Post 302555217 by kellywilliams on Wednesday 14th of September 2011 07:22:42 AM
Old 09-14-2011
To Chubler_XL

Thank you so so much Chubler_XL, this is what happened when I ran your script:
Code:
Please input gene name you wish to look for
SOD1
awk: invalid -v option

awk: invalid -v option

awk: invalid -v option

awk: invalid -v option

awk: invalid -v option

awk: invalid -v option

awk: invalid -v option

Any clue why?

Something I forgot to mention, I would like the output file to be $GeneName_date.txt please

Thank you so much again for your help,

Kelly

---------- Post updated at 09:22 PM ---------- Previous update was at 09:16 PM ----------

Dear Mayur,

Thank you so much for providing me with this script, but I am having the same problem as I have had before

When I ran your script
Code:
echo "Please input gene name you wish to look for"
         read GeneName
         grep -H $GeneName *.txt > $GeneName.txt

All it did was concatenate the 6 .txt files I have in that directory? I just want single lines from these files that contain $GeneName.

Thank you again for your help.

Kelly

P.S. Maybe I can email two of my data files?
 

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