Sponsored Content
Top Forums Shell Programming and Scripting Help with generating a script Post 302555118 by Chubler_XL on Wednesday 14th of September 2011 01:41:51 AM
Old 09-14-2011
You will need to convert to txt or csv first as awk/grep require text files not binary.

Try this:

Code:
echo Please input gene name you wish to look for
read GeneName
for file in *.txt
do
    awk -v F=$file -vN=$GeneName '$13 ~ N { print F": "$0 }' $file
done

This User Gave Thanks to Chubler_XL For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Awk Script for generating a report

Hi all, I have a log file of the below format. 20081016:000042 asdflasjdf asljfljs asdflasjf safjl 20081016:000229 /lask/ajlsdf/askdfjsa 20081016:000229 /lashflas /askdfaslj hsfhsahf 20081016:000304 lasflasj ashfashd 20081016:000304 lajfasdf ashfashdfhs I need to generate a... (3 Replies)
Discussion started by: manoj.naidu
3 Replies

2. Shell Programming and Scripting

Generating millions of record using shell script

Hi All, My requirement is like this. I want to generate records of 1 million lines. If I say lines it means one line will contain some string or numbers like AA,3,4,45,+223424234,Tets,Ghdj,+33434,345453434,........................ upto length lets say 41. ( 41 comma sepearted aplha numneric... (2 Replies)
Discussion started by: Rahil2k9
2 Replies

3. UNIX for Dummies Questions & Answers

A shell script or software for generating random passwords

Hi, Is there an shell script/batch file to genarate random passwords which expires after a stipulated time period? Please suggest a software which does this for AIX and windows both else. Thanks. (5 Replies)
Discussion started by: dwiravi
5 Replies

4. Shell Programming and Scripting

Problem with script generating files in directory recursively

I have a script which generates recursively some files in folders for a given root folder. I have checks for permissions and it works for all folders except one(i have 777 permission on it). When i try calling the script in problematic folder(problematic folder being root folder), script works as... (2 Replies)
Discussion started by: bb2
2 Replies

5. Shell Programming and Scripting

Help generating a script for next-generation sequencing data

I am not sure if this is entirely possible, but I want to compare data in a particular column in several .txt files and have a new file generated. I am a biologist with limited unix knowledge. There are currently no programs written for this type of analysis. First I would like to define the... (1 Reply)
Discussion started by: kellywilliams
1 Replies

6. Shell Programming and Scripting

Converting date/time and generating offsets in bash script

Hi all, I need a script to do some date/time conversion. It should take as an input a particular time. It should then generates a series of offsets, in both hour:minute form and number of milliseconds elapsed. For 03:00, for example, it should give back 04:02:07 (3727000ms*) 05:04:14... (2 Replies)
Discussion started by: emdan
2 Replies

7. Shell Programming and Scripting

auto-generating assembly code by variables found by script

Hi everybody I'm working on a list of registers(flip-flops to be exact), now i need to extract some value from this list and use them as arguments to pass them to some assembly code for example i have: 118 chain79 MASTER (FF-LE) FFFF 1975829 /TCK F FD1TQHVTT1 ... (1 Reply)
Discussion started by: Behrouzx77
1 Replies

8. Shell Programming and Scripting

Help with ahem Prime number Generating Script

Can anybody tell me why the second part of this script (Sieve of Eratosthenes) isn't working properly. This isnt coursework or homework just private studies ( Yes Project Euler began it ) I know there are easier ways of doing this too but I want to do it this way.:p Iam using Cygwin on Vista... (3 Replies)
Discussion started by: drewann
3 Replies

9. Shell Programming and Scripting

Random number generating script?

Having a hard time with this. Very new to scripting and linux. Spent all sunday trying to do this. Appreciate some help and maybe help breaking down what the syntax does. Create a Bash program. It should have the following properties • Creates a secret number between 1 and 100 i. The... (3 Replies)
Discussion started by: LINUXnoob15
3 Replies

10. Shell Programming and Scripting

Is there a way to handle commas inside the data when generating a csv file from shell script?

I am extracting data via sql query and some of the data has commas. Output File must be csv and I cannot update the data in the db (as it is used by other application). Example table FavoriteThings Person VARCHAR2(25), Favorite VARCHAR2(100) Sample Data Greta rain drop on... (12 Replies)
Discussion started by: patk625
12 Replies
X2SYS_MERGE(1gmt)					       Generic Mapping Tools						 X2SYS_MERGE(1gmt)

NAME
x2sys_merge - Merge an updated COEs tables SYNOPSIS
x2sys_merge -Amain_COElist.d -Mnew_COElist.d DESCRIPTION
x2sys_merge will read two crossovers data base and output the contents of the main one updated with the COEs in the second one. The second file should only contain updated COEs relatively to the first one. That is, it MUST NOT contain any new two tracks intersections (This point is NOT checked in the code). This program is useful when, for any good reason like file editing NAV correction or whatever, one had to recompute only the COEs between the edited files and the rest of the database. -A Specify the file main_COElist.d with the main crossover error data base. -M Specify the file new_COElist.d with the newly computed crossover error data base. OPTIONS
No space between the option flag and the associated arguments. EXAMPLES To update the main COE_data.txt with the new COEs estimations saved in the smaller COE_fresh.txt, try x2sys_merge -ACOE_data.txt -MCOE_fresh.txt > COE_updated.txt SEE ALSO
x2sys_binlist(1), x2sys_cross(1), x2sys_datalist(1), x2sys_get(1), x2sys_init(1), x2sys_list(1), x2sys_put(1), x2sys_report(1) GMT 4.5.7 15 Jul 2011 X2SYS_MERGE(1gmt)
All times are GMT -4. The time now is 04:17 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy