You will need to convert to txt or csv first as awk/grep require text files not binary.
Try this:
Code:
echo Please input gene name you wish to look for
read GeneName
for file in *.txt
do
awk -v F=$file -vN=$GeneName '$13 ~ N { print F": "$0 }' $file
done
This User Gave Thanks to Chubler_XL For This Post:
Hi all,
I have a log file of the below format.
20081016:000042 asdflasjdf asljfljs asdflasjf safjl
20081016:000229 /lask/ajlsdf/askdfjsa
20081016:000229 /lashflas /askdfaslj hsfhsahf
20081016:000304 lasflasj ashfashd
20081016:000304 lajfasdf ashfashdfhs
I need to generate a... (3 Replies)
Hi All,
My requirement is like this.
I want to generate records of 1 million lines. If I say lines it means one line will contain some string or numbers like
AA,3,4,45,+223424234,Tets,Ghdj,+33434,345453434,........................ upto length lets say 41. ( 41 comma sepearted aplha numneric... (2 Replies)
Hi,
Is there an shell script/batch file to genarate random passwords which expires after a stipulated time period? Please suggest a software which does this for AIX and windows both else.
Thanks. (5 Replies)
I have a script which generates recursively some files in folders for a given root folder.
I have checks for permissions and it works for all folders except one(i have 777 permission on it). When i try calling the script in problematic folder(problematic folder being root folder), script works as... (2 Replies)
I am not sure if this is entirely possible, but I want to compare data in a particular column in several .txt files and have a new file generated. I am a biologist with limited unix knowledge. There are currently no programs written for this type of analysis.
First I would like to define the... (1 Reply)
Hi all,
I need a script to do some date/time conversion. It should take as an input a particular time. It should then generates a series of offsets, in both hour:minute form and number of milliseconds elapsed.
For 03:00, for example, it should give back 04:02:07 (3727000ms*) 05:04:14... (2 Replies)
Hi everybody
I'm working on a list of registers(flip-flops to be exact), now i need to extract some value from this list and use them as arguments to pass them to some assembly code
for example i have:
118 chain79 MASTER (FF-LE) FFFF 1975829 /TCK F FD1TQHVTT1 ... (1 Reply)
Can anybody tell me why the second part of this script (Sieve of Eratosthenes) isn't working properly. This isnt coursework or homework just private studies ( Yes Project Euler began it ) I know there are easier ways of doing this too but I want to do it this way.:p
Iam using Cygwin on Vista... (3 Replies)
Having a hard time with this. Very new to scripting and linux. Spent all sunday trying to do this. Appreciate some help and maybe help breaking down what the syntax does.
Create a Bash program. It should have the following properties
• Creates a secret number between 1 and 100
i. The... (3 Replies)
I am extracting data via sql query and some of the data has commas. Output File must be csv and I cannot update the data in the db (as it is used by other application).
Example
table FavoriteThings
Person VARCHAR2(25),
Favorite VARCHAR2(100)
Sample Data
Greta rain drop on... (12 Replies)
Discussion started by: patk625
12 Replies
LEARN ABOUT DEBIAN
x2sys_merge
X2SYS_MERGE(1gmt) Generic Mapping Tools X2SYS_MERGE(1gmt)NAME
x2sys_merge - Merge an updated COEs tables
SYNOPSIS
x2sys_merge -Amain_COElist.d -Mnew_COElist.d
DESCRIPTION
x2sys_merge will read two crossovers data base and output the contents of the main one updated with the COEs in the second one. The second
file should only contain updated COEs relatively to the first one. That is, it MUST NOT contain any new two tracks intersections (This
point is NOT checked in the code). This program is useful when, for any good reason like file editing NAV correction or whatever, one had
to recompute only the COEs between the edited files and the rest of the database.
-A Specify the file main_COElist.d with the main crossover error data base.
-M Specify the file new_COElist.d with the newly computed crossover error data base.
OPTIONS
No space between the option flag and the associated arguments.
EXAMPLES
To update the main COE_data.txt with the new COEs estimations saved in the smaller COE_fresh.txt, try
x2sys_merge -ACOE_data.txt -MCOE_fresh.txt > COE_updated.txt
SEE ALSO x2sys_binlist(1), x2sys_cross(1), x2sys_datalist(1), x2sys_get(1), x2sys_init(1), x2sys_list(1), x2sys_put(1), x2sys_report(1)GMT 4.5.7 15 Jul 2011 X2SYS_MERGE(1gmt)