only one script is enough. But you need 7 different autosys job. (If you want to clean the directories in different time).
If you want to clean all the directories in a particular time, then one job and one script is enough.
put all the 7 directories in one file ( filesToClean.txt )
If you want to execute the scripts in different time, then you need to create 7 autosys jobs and in the command, you need to pass the arugument for clean.sh
now, I tried looking at the User manuals I can find on the internet concerning autosys but these manuals seem to be quite confusing to me.
My question is, does anyone have a straight forward explanation on how to modify and/or create jobs in autosys??? (3 Replies)
I need to search for a failed status of 2 autosys jobs which write to the same logfile. Is there any way to do that on one line? I already know the following doesn't work, but is there a way to get it to work, or will I have to do a loop?
RUN_STATUS=autorep -J jobname jobname
if
then
... (1 Reply)
hello There,
I am pretty much new to Shell Scripting and also to AutoSys. I would like to know how to list the Autosys jobs in FA status using shell scripting. I would like to get an email alert as and when any Autosys job fails. Also, it should give the path of the Log file.
Could you please... (0 Replies)
I need to list out all the AutoSys jobs that are referencing a particular AutoSys global variable.
I know the autorep command will definitely need to be used here, and maybe grep as well, but I can't figure out exactly how it's to be done. For example, "autorep -q -J %jobnamewildcard% | grep... (1 Reply)
Hi
I have 2 autosys jobs (JobA and JobB) both are in different boxes but part of one big box. I want to make them mutually exclusive so that when JobA is running then JobB should not run and wait for jobA to finish/fail/terminate and vice versa.
Both jobs have their own starting conditions... (1 Reply)
Can anyone please tell me how to refresh the jobs in Autosys Scheduler?
---------- Post updated at 03:19 PM ---------- Previous update was at 03:18 PM ----------
I need a command to refresh it. (2 Replies)
I have been working on to neatly present the job dependency lineage in autosys through ksh/perl and I am having trouble in recursively finding the dependency.
it will be great if anyone could share their thoughts on this. (2 Replies)
I have been working on to neatly present the job dependency lineage in autosys through ksh/perl and I am having trouble in recursively finding the dependency.
it will be great if anyone could share their thoughts on this.?
I know that job_depends in autosys will help me give first level of... (0 Replies)
Hi Gurus,
below list is autosys job output stats, it includes boxes, sub-boxes and detail jobs. detail jobs are most right indented ones in each box. the requests is to get all these detail jobs list.
the only way to identify the "detail job", is intend.
auto_job ... (2 Replies)
Discussion started by: green_k
2 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)