I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
I have a large text-file with tab-delimited genetic data that looks like:
KSC112 KSC234 0 0 1 1 A G C T
I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns).
Does anyone have an idea how to do this? (2 Replies)
I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
I have tried the following to no avail.
xargs -n8 < test.txt
awk '{if(NR%6!=0){p=""}else{p="\n"};printf $0" "p}' Mod_Alm_log.txt > test.txt
I have tried different variations of the above, the problem is mixes lines together.
And it includes the tags "%a and %A" I need them to be all tab... (16 Replies)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT DEBIAN
nncheck
NNCHECK(1) General Commands Manual NNCHECK(1)NAME
nncheck - check for unread articles
SYNOPSIS
nncheck [ -Q -r -t ] [ -f format ]
DESCRIPTION
nncheck will report if there are some articles on the system which you have not read.
Without options, nncheck will simply print a message reporting the number of unread articles with the following format:
There are 327 unread articles in 25 groups
and when there are no unread articles, the following message will be printed:
No News (is good news)
nncheck will exit with a value of 0 if there are unread articles, and 99 if there is no news (see the exception for the -r option.)
It is important to notice that even though unread articles have been reported by nncheck, the actual number of unread articles may be much
lower (or even zero) when nn is invoked to read the articles. This is because the calculation of the number of unread articles is only
based on recorded article number intervals. Invoking nn to read the articles may reveal that the articles have previously been read in
another news group, have been expired, or are killed using the auto-kill facility.
The following options are used to modify the amount and format of the output from nncheck:
-Q Quiet operation. No output is produced, only the exit status indicate whether there is unread news.
-t Print the name of each group with unread articles, and how many unread articles there are (not counting split digests!).
-r Output a single integer value specifying the number of unread articles, and exit with a 0 status (somebody told me this would be
useful).
-f format
Output the number of unread articles using the specified format. The format is a text that may contain the following %-escapes:
%-code resulting output
%u "uuu unread articles"
%g "ggg groups"
%i "is" if 1 unread article, else "are"
%U "uuu"
%G "ggg"
where uuu is the number of unread articles, and ggg is the number of groups with unread articles.
For example, the default output format is
"There %i %u in %g"
which I prefer to the following less perfect format:
"There are %U unread article(s) in %G group(s)"
FILES
~/.newsrc The record of read articles
$db/MASTER The database master index
SEE ALSO nn(1), nngoback(1), nngrab(1), nngrep(1), nnpost(1), nntidy(1)nnadmin(1M), nnusage(1M), nnmaster(1M)AUTHOR
Kim F. Storm, Texas Instruments A/S, Denmark
E-mail: storm@texas.dk
4th Berkeley Distribution Release 6.6 NNCHECK(1)