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Full Discussion: selecting and deleting specific lines with condition
Top Forums Shell Programming and Scripting selecting and deleting specific lines with condition Post 302553700 by yazu on Thursday 8th of September 2011 09:47:39 AM
Old 09-08-2011
I'm afraid it's hard to understand your problem. May you give expected or deleted rows (and please, one more time - why?) in this test set:
Code:
awk '/^\|/ {print $3, $6}' INPUTFILE
58@O12 1174@H1
58@O12 1174@H2
34@O12 1122@H1
34@O12 1122@H2
4@O12 1122@H2
4@O12 1122@H1
58@O16 396@H2
58@O15 396@H2
54@O26 1078@H2
58@O16 396@H1
23@O16 400@H1
23@O16 400@H2
48@O16 1162@H2
58@O15 396@H1
48@O16 1162@H1
19@O13 1078@H1
48@O26 377@H2
53@O15 1162@H2
19@O22 1078@H1
14@O12 402@H1
53@O15 1162@H1
14@O12 402@H2
48@O26 377@H1
48@O16 396@H2

 

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LEARN ABOUT DEBIAN

coils-wrap

COILS-WRAP(1)							   User Commands						     COILS-WRAP(1)

NAME

       coils-wrap - runs ncoils three times to give you a three-window output

SYNOPSIS

       coils-wrap [OPTION]

DESCRIPTION

       coils-wrap runs ncoils three times to give you a three-window output.

       ncoils is a program that compares a sequence to a database of known parallel two-stranded coiled-coils and derives a similarity score. By
       comparing this score to the distribution of scores in globular and coiled-coil proteins, the program then calculates the probability that
       the sequence will adopt a coiled-coil conformation.

OPTIONS

       -i  input file in FASTA format

       -o  output file

       -r  raw output file, default: `<output file>_raw'

       -m  matrix type; set matrix (MTK or MTIDK)

       -w  weight a&d = b,c,e,f&g (boolean)

EXAMPLES

       "coils-wrap -m MTIDK -i /usr/share/doc/ncoils/1srya.fa -o /tmp/coils.out -r /tmp/coils_raw.txt && less /tmp/coils.out /tmp/coils_raw.txt"

       "ncoils -win 14 < /usr/share/doc/ncoils/1srya.fa"

FILES

       /usr/share/coiledcoils/*.mat
	   matrix data files

AUTHOR

       R.B. Russell, A.N. Lupas, 1999

COPYRIGHT AND LICENSE

       GPL

       Based on Lupas, Van Dyck & Stock (1991) Science 252,1162-1164

SEE ALSO

       ncoils(1), "usr/share/doc/coils/README", http://www.russelllab.org/cgi-bin/coils/coils-svr.pl <http://www.russelllab.org/cgi-
       bin/coils/coils-svr.pl>

       A Lupas: Prediction and Analysis of Coiled-Coil Structures. Methods in Enzymology, 266, 513-525, 1996
       A. Lupas, M. Van Dyke, and J. Stock: Predicting coiled coils from protein sequences. Science, 252, 1162-1164, 1991

2002								    2011-10-29							     COILS-WRAP(1)
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