Sponsored Content
Full Discussion: sort split merge -u unique
Top Forums Shell Programming and Scripting sort split merge -u unique Post 302551977 by drl on Thursday 1st of September 2011 09:24:23 AM
Old 09-01-2011
Hi.

Most file sorting programs will follow the design noted in External sorting - Wikipedia, the free encyclopedia -- i.e. they will create smaller temporary sorted files, then do as many merges as necessary to accomplish a final sort. If you think about it, this is very reasonable: you sort a memory-load of data (as an array, using one of any number of algorithms), write it out to a temporary file until all input files are read, then you read chunks from each sorted temporary to produce a final file. If there too many temporary files, you might need to do an intermediate merge, etc.

I just glanced though a few thousand lines of GNU sort ( part of coreutils, coreutils-8.5/src/sort.c ) and it seems to do the sorting into temporary files.

I think the most you could do to help a system sort is to provide one or more directories for the temporary files on devices different from the input file:
Code:
       -T, --temporary-directory=DIR
              use DIR for temporaries, not $TMPDIR or /tmp; multiple options
              specify multiple directories

-- excerpt from Linux man sort

You could experiment with your own splitting by splitting a sample of your data, using utility split, and then sorting those files. I'd guess that would be slower than sort's internal splitting, but it might be worth a try, at least it would be educational.

You could also use a trace facility to look at the sort while it is going on. That would probably show scratch files being opened and child processes being created to help with the overall process: strace - trace system calls and signals, for example.

Best wishes ... cheers, drl
 

9 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Sort and Unique in Perl

Hi, May I know, if a pipe separated File is large, what is the best method to calculate the unique row count of 3rd column and get a list of unique value of the 3rdcolum? Thanks in advance! (20 Replies)
Discussion started by: deepakwins
20 Replies

2. UNIX for Dummies Questions & Answers

split a file with unique sets

This may sound like a trivial problem, but I still need some help: I have a file with ids and I want to split it 'n' ways (could be any number) into files: 1 1 1 2 2 3 3 4 5 5 Let's assume 'n' is 3, and we cannot have the same id in two different partitions. So the partitions may... (8 Replies)
Discussion started by: ChicagoBlues
8 Replies

3. Shell Programming and Scripting

Awk sort and unique

Input file --------- 12:name1:|host1|host1|host2|host1 13:name2:|host1|host1|host2|host3 14:name3: ...... Required output --------------- 12:name1:host1(2)|host1(1) 13:name2:host1(2)|host2(1)|host3(1) 14:name3: where (x) - Count how many times field appears in last column ... (3 Replies)
Discussion started by: greycells
3 Replies

4. Shell Programming and Scripting

How to merge columns into lines, using unique keys?

I would really appreciate a sulution for this : invoice# client# 5929 231 4358 231 2185 231 6234 231 1166 464 1264 464 3432 464 1720 464 9747 464 1133 791 4930 791 5496 791 6291 791 8681 989 3023 989 (2 Replies)
Discussion started by: hemo21
2 Replies

5. UNIX for Dummies Questions & Answers

How to count specific columns and merge with unique ones?

Hi. I am not sure the title gives an optimal description of what I want to do. I have several text files that contain data in many columns. All the files are organized the same way, but the data in the columns might differ. I want to count the number of times data occur in specific columns,... (0 Replies)
Discussion started by: JamesT
0 Replies

6. UNIX for Dummies Questions & Answers

Print unique lines without sort or unique

I would like to print unique lines without sort or unique. Unfortunately the server I am working on does not have sort or unique. I have not been able to contact the administrator of the server to ask him to add it for several weeks. (7 Replies)
Discussion started by: cokedude
7 Replies

7. Shell Programming and Scripting

How to merge two files with unique values matching.?

I have one script as below: #!/bin/ksh Outputfile1="/home/OutputFile1.xls" Outputfile2="/home/OutputFile2.xls" InputFile1="/home/InputFile1.sql" InputFile2="/home/InputFile2.sql" echo "Select hobby, class, subject, sports, rollNumber from Student_Table" >> InputFile1 echo "Select rollNumber... (3 Replies)
Discussion started by: Sharma331
3 Replies

8. Shell Programming and Scripting

Sort unique

Hi, I have an input file that I have sorted in a previous stage by $1 and $4. I now need something that will take the first record from each group of data based on the key being $1 Input file 1000AAA|"ZZZ"|"Date"|"1"|"Y"|"ABC"|""|AA 1000AAA|"ZZZ"|"Date"|"2"|"Y"|"ABC"|""|AA... (2 Replies)
Discussion started by: Ads89
2 Replies

9. UNIX for Beginners Questions & Answers

Merge 4 bim files by keeping only the overlapping variants (unique rs values )

Dear community, I am facing a problem and I kindly ask your help: I have 4 different data sets consisted from 3 different types of array. On each file, column 1 is chromosome position, column 2 is SNP id etc... Lets say I have the following (bim) datasets: x2014: 1 rs3094315... (4 Replies)
Discussion started by: fondan
4 Replies
WRAP-AND-SORT(1)					      General Commands Manual						  WRAP-AND-SORT(1)

NAME
wrap-and-sort - wrap long lines and sort items in Debian packaging files SYNOPSIS
wrap-and-sort [options] DESCRIPTION
wrap-and-sort wraps the package lists in Debian control files. By default the lists will only split into multiple lines if the entries are longer than 80 characters. wrap-and-sort sorts the package lists in Debian control files and all .install files. Beside that wrap-and-sort removes trailing spaces in these files. This script should be run in the root of a Debian package tree. It searches for control, control.in, copyright, copyright.in, install, and *.install in the debian directory. OPTIONS
-h, --help Show this help message and exit. -a, --wrap-always Wrap all package lists in the Debian control file even if the entries are shorter than 80 characters and could fit in one line line. -s, --short-indent Only indent wrapped lines by one space (default is in-line with the field name). -b, --sort-binary-packages Sort binary package paragraphs by name. -k, --keep-first When sorting binary package paragraphs, leave the first one at the top. Unqualified debhelper(7) configuration files are applied to the first package. -n, --no-cleanup Do not remove trailing whitespaces. -d path, --debian-directory=path Location of the debian directory (default: ./debian). -f file, --file=file Wrap and sort only the specified file. You can specify this parameter multiple times. All supported files will be processed if no files are specified. -v, --verbose Print all files that are touched. AUTHORS
wrap-and-sort and this manpage have been written by Benjamin Drung <bdrung@debian.org>. Both are released under the ISC license. DEBIAN
Debian Utilities WRAP-AND-SORT(1)
All times are GMT -4. The time now is 11:19 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy