Hi ,
I am new to shell scripting (ksh shell) and trying to accomplish few requiremtns.
I have a file with the following format
EMP NO EMP NAME AGE Amt Paid
12 Mark Taylor 32 32333
14 James Brown... (5 Replies)
Hi,
I have gps receiver log..its giving readings .like below
Trying 127.0.0.1...
Connected to localhost.
Escape character is '^]'.
GPSD,R=1
$GPGSV,3,1,11,08,16,328,40,11,36,127,00,28,33,283,39,20,11,165,00*71... (3 Replies)
Hi,
I need to read a text file from shell script line by line and copy the feilds of each line.
Below is the complete requirement.
I've text file which contains ...
pgm1 file11 file12 file13
pgm2 file21 file22
pgm3 file31 file32 file33
I'll give input as... (4 Replies)
FOLKS ,
i have a text file that is generated automatically of an another korn shell script, i want to bring in the fifth line of the text file in to my korn shell script and look for a particular word in the line . Can you all share some thoughts on this one.
thanks...
Venu (3 Replies)
Hi all
I have spent half a day trying to create a shell script which reads a configuration file on a line by line basis.
The idea of the file is that each will contain server information, such as IP address and various port numbers. The line could also be blank (The file is user created). Here... (1 Reply)
I have a LOG file which looks like this
Import started at: Mon Jul 23 02:13:01 EDT 2012
Initialization completed in 2.146 seconds.
--------------------------------------------------------------------------------
--
Import summary for Import item: PolicyInformation... (8 Replies)
Hello,
I need a program that read a file line by line and prints out lines 1, 2 & 3 after an empty line... An example of entries in the file would be:
SRVXPAPI001 ERRO JUN24 07:28:34 1775
REASON= 0000, PROCID= #E506 #1065: TPCIPPR, INDEX= 003F
... (8 Replies)
Hi All,
Am trying to write wrapper shell/bash script on a utility tool for which i need to pass 2 files as arugment to execute utility tool.
Wraper script am trying is to do with above metion 2 files.
utility tool accepts :
a. userinfo file : which contains username
b. item file : which... (2 Replies)
i have a text file as belows, it includes 2 columns, 1st is the column name, 2nd is the file_name
data_file.txt
column_name file_name
col1 file1
col2 file2
col3 file1
col4 file1
col5 file2
now, i would like to... (4 Replies)
Discussion started by: tester111
4 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)