Hi there,
I want some help on scripting regarding file processing.
I have a scenario in which I have 10 files. (file1.txt, file2.txt....) and they are in paricular format.
I want to read these files and append some text lines at the begining of each file and write this updated contents of... (2 Replies)
Hi All,
Query 1 :
I want to know how we can get a count of multipe occurrences of a particular expression in another string.
For Eg. If my string is " 12" and i need to count the number of spaces preceeding 12
Query 2 :
Also want to know how we can change the alignment of a... (9 Replies)
Hi
I have a tab delimited file with 3 fields. I need to sort this file on the first field and remove all the records where the first field has dulplicates. For eg my file is
133|arrfdfdg|sdfdsg
234|asfsdgfs|aasdfs
133|affbfsde|dgfg
When this file gets sorted I need the result to be ... (2 Replies)
Hi :)
I am writing a ksh
I have a string of general format
A12B3456CD78
the string is of variable length
the string always ends with numbers (here it is 78.. it can be any number of digits may be 789 or just 7)
before these ending numbers are alphabets (here it is CD can even be... (3 Replies)
Hey everyone. So the background of the problem is that the ps3 does not support the mkv container, but DOES support the avi one. Here is the script to convert one file with the name hardcoded in:
#!/bin/sh
mencoder -oac... (2 Replies)
Hi All,
can you tell me how to drop all preceding zeros in a number. For example, if i have a numbers like 000876838347 and 0000007854762543..how to make them as 876838347 and 7854762543. (6 Replies)
Hi everyone,
I need little help in shell operations from C++ program.
Here I furnish the details of problem:
1. Lets say my current working path is myWorkingPath.
2. In my working path I have list of name directories and each name directory has two more sub directories say A/B.
(now path to... (5 Replies)
Hi Folks,
Below is example of an Input data which is used, based on the last 2, 3 & 4 column, I want my first column data to be collated as shown in the output section.
a,ac,tc,ic
b,ac,tc,ic
c,ac,tc,ic
d,ac,tc,ic
b,bc,tc,ic
d,bc,tc,ic
e,bc,tc,ic
I want my output to be
... (2 Replies)
Discussion started by: nikhil jain
2 Replies
LEARN ABOUT DEBIAN
bio::symbol::alphabeti
Bio::Symbol::AlphabetI(3pm) User Contributed Perl Documentation Bio::Symbol::AlphabetI(3pm)NAME
Bio::Symbol::AlphabetI - A Symbol Alphabet
SYNOPSIS
# get a Bio::Symbol::AlphabetI object somehow
my @symbols = $alphabet->symbols;
my @subalphas = $alphabet->alphabets;
if( $alphabet->contains($symbol) ) {
# do something
}
DESCRIPTION
Alphabet contains set of symbols, which can be concatenated to form symbol lists. Sequence string, for example, is stringified
representation of the symbol list (tokens of symbols).
This module was implemented for the purposes of meeting the BSANE/BioCORBA spec 0.3 only.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
AlphabetI Interface methods
symbols
Title : symbols
Usage : my @symbols = $alphabet->symbols();
Function: Get/Set Symbol list for an alphabet
List of symbols, which make up this alphabet.
Returns : Array of L<Bio::Symbol::SymbolI> objects
Args : (optional) Array of L<Bio::Symbol::SymbolI> objects
alphabets
Title : alphabets
Usage : my @alphabets = $alphabet->alphabets();
Function: Get/Set Sub Alphabet list for an alphabet
Sub-alphabets. E.g. codons made from DNAxDNAxDNA alphabets
Returns : Array of L<Bio::Symbol::AlphabetI> objects
Args : (optional) Array of L<Bio::Symbol::AlphabetI> objects
contains
Title : contains
Usage : if($alphabet->contains($symbol)) { }
Function: Tests of Symbol is contained in this alphabet
Returns : Boolean
Args : L<Bio::Symbol::SymbolI>
perl v5.14.2 2012-03-02 Bio::Symbol::AlphabetI(3pm)