Hi,
I'm trying to strip all lines between two headers in a file:
### BEGIN ###
Text to remove, contains all kinds of characters
...
Antispyware-Downloadserver.com (Germany)=http://www.antispyware-downloadserver.c
om/updates/
Antispyware-Downloadserver.com #2... (3 Replies)
Hi,
I have file like below.
Unix:/pclls/turc>cat tibc.property
executeReceiver=Y
executeSender=Y
I want to replace executeSender=N in the file. My file should be like below.
executeReceiver=Y
executeSender=N
I tried with the below command, its giving error.
cat tibc.property |... (2 Replies)
Hi ,
I have a typical situation. I have 4 files and with different headers (number of headers is varible ).
I need to make such a merged file which will have headers combined from all files (comman coluns should appear once only).
For example -
File 1
H1|H2|H3|H4
11|12|13|14
21|22|23|23... (1 Reply)
Hi
I have 2 files:-
1. List of files which consists of names of some output files.
2. A delimited file; delimted by "|"
I want to replace the value of the $23 (23rd column) in the delimited file with name in the first file. It is always position to position. Meaning first row of the first... (5 Replies)
Hi ,
Pls help on this.
Input file:
NAME1 BSC1
TEXT ID 1
MAINSFAIL
TEXT ID 2
DGON
TEXT ID 3
lOADONDG
NAME2 BSC2
TEXT ID 1
DGON
TEXT ID 3
lOADONG (1 Reply)
Hi All,
I am fairly new to the world of Unix, and I am looking for a way to replace a line of text in a file with a delimited array of values.
I have an aliases file that is currently in use on our mail server that we are migrating off of. Until the migration is complete, the server must stay... (8 Replies)
Hi,
We have a file (e.g. a .csv file, but could be any other format), with 2 columns: the old value and the new value. We need to modify all the files within the current directory (including subdirectories), so find and replace the contents found in the first column within the file, with the... (9 Replies)
Hello,
I am using Awk in UBUNTU 12.04.
I have a file like following with three fields and 44706 rows.
F1 A A
F2 G G
F3 A T
I have another file like this:
AL_1 F1 A A
AL_2 F1 A T
AL_3 F1 A A
AL_1 F2 G G
AL_2 F2 G A
AL_3 F2 G G
BO_1 F1 A A
BO_2 F1 A T... (6 Replies)
i have a real data prod file with 80+ fields containing 1k -2k records. i have to extract say 12 columns out of this which are sensitive fields along with one primary key say SEQ_ID (like DOB,account no, name, SEQ_ID, govtid etc) in a lookup file. i have to replace these sensitive fields in... (11 Replies)
I have 5 sequences in a fasta file namely gene1.fasta as follows,
gene1.fasta
>1256
ATGTAGC
>GEP
TAGAG
>GTY578
ATGCATA
>67_iga
ATGCTGA
>90_ld
ATGCTG
I need to rename the gene1.fasta file based on the sequence position specified in list.txt as follows,
list.txt
position1=org5... (5 Replies)
Discussion started by: dineshkumarsrk
5 Replies
LEARN ABOUT DEBIAN
ace::sequence::gene
Ace::Sequence::Gene(3pm) User Contributed Perl Documentation Ace::Sequence::Gene(3pm)NAME
Ace::Sequence::Gene - Simple "Gene" Object
SYNOPSIS
# open database connection and get an Ace::Object sequence
use Ace::Sequence;
# get a megabase from the middle of chromosome I
$seq = Ace::Sequence->new(-name => 'CHROMOSOME_I,
-db => $db,
-offset => 3_000_000,
-length => 1_000_000);
# get all the genes
@genes = $seq->genes;
# get the exons from the first one
@exons = $genes[0]->exons;
# get the introns
@introns = $genes[0]->introns
# get the CDSs (NOT IMPLEMENTED YET!)
@cds = $genes[0]->cds;
DESCRIPTION
Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability
to retrieve the annotated introns and exons of the gene.
OBJECT CREATION
You will not ordinarily create an Ace::Sequence::Gene object directly. Instead, objects will be created in response to a genes() call to
an Ace::Sequence object.
OBJECT METHODS
Most methods are inherited from Ace::Sequence::Feature. The following methods are also supported:
exons()
@exons = $gene->exons;
Return a list of Ace::Sequence::Feature objects corresponding to annotated exons.
introns()
@introns = $gene->introns;
Return a list of Ace::Sequence::Feature objects corresponding to annotated introns.
cds()
@cds = $gene->cds;
Return a list of Ace::Sequence::Feature objects corresponding to coding sequence. THIS IS NOT YET IMPLEMENTED.
relative()
$relative = $gene->relative;
$gene->relative(1);
This turns on and off relative coordinates. By default, the exons and intron features will be returned in the coordinate system used
by the gene. If relative() is set to a true value, then coordinates will be expressed as relative to the start of the gene. The first
exon will (usually) be 1.
SEE ALSO
Ace, Ace::Object, Ace::Sequence,Ace::Sequence::Homol, Ace::Sequence::Feature, Ace::Sequence::FeatureList, GFF
AUTHOR
Lincoln Stein <lstein@cshl.org> with extensive help from Jean Thierry-Mieg <mieg@kaa.crbm.cnrs-mop.fr>
Copyright (c) 1999, Lincoln D. Stein
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 148:
You forgot a '=back' before '=head1'
perl v5.14.2 2001-02-18 Ace::Sequence::Gene(3pm)