Hi
I have a file with data arranged into columns. The first column is the chromosome name.
When I use grep to subset only rows with chr1, I get chr1 but also chr10, chr11,..
How do I get only rows with chr1?
grep chr1 filein > fileout
head fileout
chr1 59757841
chr11 108258691 ... (2 Replies)
Hi,
I'm struggling with a regex that would match a 'b' that follows an 'a' and is at the end of a string of non-white characters. For example:
Line 1: aba abab b abb aab bab baa
I can find the right strings but I'm lacking knowledge of how to "discard" the bits that precede bs.... (2 Replies)
Hi all,
any idea how to match the following:
char*<no or any string or space> buf and
char *<no or any string or space> buf
i need to capture the buf characters too.
currently i need two checks to cover this:
#search char* <any string> buf or char *<any string> buf
@noarray =... (2 Replies)
Hello All
I have file which contain sample data like below -
test.txt
----------------------------------------------
jambesh aaa india
trxxx
sdasd
mentor
asss
light
train
bbblah
---------------------------------------------
I want to write a regX which would print only those... (4 Replies)
I am trying to match a similar line using grep with regular expression
the line is
/remote/mac/pbbbb/abc/def/hij/hop/include/abc/tif/element/test/testfiles/Office.cpp:57: const OfficeType& getType().get() const;
I just need to extract the bold characters using grep with regular expression.... (5 Replies)
hi everyone
suppose we have two scenario
echo ABCD | grep \{4\}
DATE
echo SYSDATE | grep \{4\}
SYSDATE
i want to match the string of four length only please help (5 Replies)
Hi Everybody!
I need some help with a regular expression in Perl that will match files named messages, but also files named message.1, message.2 and so on. So really I need one that will find messages and messages that might be followed by a period and a digit without matching other files like... (2 Replies)
I will simplify the explaination a bit, I need to parse through a 87m file -
I have a single text file in the form of :
<NAME>house........
SOMETEXT
SOMETEXT
SOMETEXT
.
.
.
.
</script>
MORETEXT
MORETEXT
.
.
. (6 Replies)
echo 20110101 | awk '{ print match($0,/^((17||18||19||20)|)-*(|0|1)-*(|0||3)$/))
I am getting a match for the above, where as it shouldn't, as there is no hyphen in the echoed date.
Another question is what is the difference between || and | in the above statement (4 Replies)
Hello,
one step in a shell script i am writing, involves Grep command to search a regular expression in a line an only print the string after the match
an example line is below
/logs/GRAS/LGT/applogs/lgt-2016-08-24/2016-08-24.8.log.zip:2016-08-24 19:12:48,602 ERROR... (9 Replies)
Discussion started by: Ramneekgupta91
9 Replies
LEARN ABOUT DEBIAN
h5diff
h5diff(1) General Commands Manual h5diff(1)NAME
h5diff - Compares two HDF5 files and reports the differences.
SYNOPSIS
h5diff file1 file2 [OPTIONS] [object1 [object2 ] ]
DESCRIPTION
h5diff is a command line tool that compares two HDF5 files, file1 and file2, and reports the differences between them.
Optionally, h5diff will compare two objects within these files. If only one object, object1, is specified, h5diff will compare object1 in
file1 with object1 in file2. In two objects, object1 and object2, are specified, h5diff will compare object1 in file1 with object2 in
file2. These objects must be HDF5 datasets.
object1 and object2 must be expressed as absolute paths from the respective file's root group.
Additional information, with several sample cases, can be found in the document H5diff Examples.
OPTIONS
file1 file2
The HDF5 files to be compared.
-h Print all differences.
-r Print only the names of objects that differ; do not print the differences. These objects may be HDF5 datasets, groups, or named
datatypes.
-n count
Print difference up to count differences, then stop. count must be a positive integer.
-d delta
Print only differences that are greater than the limit delta. delta must be a positive number. The comparison criterion is whether
the absolute value of the difference of two corresponding values is greater than delta (e.g., |a-b| > delta, where a is a value in
file1 and b is a value in file2).
-p relative
Print only differences that are greater than a relative error. relative must be a positive number. The comparison criterion is
whether the absolute value of the difference 1 and the ratio of two corresponding values is greater than relative (e.g., |1-(b/a)| >
relative where a is a value in file1 and b is a value in file2).
object1 object2
Specific object(s) within the files to be compared.
EXAMPLES
The following h5diff call compares the object /a/b in file1 with the object /a/c in file2:
h5diff file1 file2 /a/b /a/c
This h5diff call compares the object /a/b in file1 with the same object in file2:
h5diff file1 file2 /a/b
And this h5diff call compares all objects in both files:
h5diff file1 file2
SEE ALSO h5dump(1), h5ls(1), h5repart(1), h5import(1), gif2h5(1), h52gif(1), h5perf(1)h5diff(1)