Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
Code:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;
SAO=0;SCS=0;SSR=0;VC=SNP;VP=050000000005000000000100;WGT=1;dbSNPBuildID=132
1 10433 rs56289060 A AC . PASS ASP;RSPOS=10433;
SAO=0;SCS=0;SSR=0;VC=INDEL;VP=050000000005000000000200;WGT=1;dbSNPBuildID=129
I would like it to be:
Code:
chr1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;
SAO=0;SCS=0;SSR=0;VC=SNP;VP=050000000005000000000100;WGT=1;dbSNPBuildID=132
chr1 10433 rs56289060 A AC . PASS ASP;RSPOS=10433;
SAO=0;SCS=0;SSR=0;VC=INDEL;VP=050000000005000000000200;WGT=1;dbSNPBuildID=129
Any ideas?
Last edited by Scott; 07-19-2011 at 01:19 PM..
Reason: Please use code tags
Hey Everybody,
I am having much trouble figuring this out, as I am not really a programmer..:mad:
Datafile.txt
Column0 Column1 Column2
ABC DEF xxxGHI
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I get something like that in an output file:
... (13 Replies)
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73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
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I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
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Hello Everyone..
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FileP.txt
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Discussion started by: YogeshG
2 Replies
LEARN ABOUT DEBIAN
uget-gtk
UGET-GTK(1) User Commands UGET-GTK(1)NAME
uget-gtk - a download manager that uses gtk+2, and libcurl
SYNOPSIS
uget-gtk [options] [URL]
DESCRIPTION
Help Options:
-?, --help
Show help options.
--help-all
Show all help options.
--help-gtk
Show GTK+ Options
Application Options:
--quiet
add download directly. Don't show dialog.
--category-index=N
add download to Nth category. (default -1)
--folder=FOLDER
placed download file in FOLDER.
--filename=FILE
set download filename to FILE.
--user=USER
set both ftp and http user to USER.
--password=PASS
set both ftp and http password to PASS.
--proxy-type=N
set proxy type to N. (0=Don't use)
--proxy-host=HOST
set proxy host to HOST.
--proxy-port=PORT
set proxy port to PORT.
--proxy-user=USER
set USER as proxy username.
--proxy-password=PASS
set PASS as proxy password.
--http-user=USER
set http user to USER.
--http-password=PASS
set http password to PASS.
--http-referer=URL
include `Referer: URL' header in HTTP request.
--http-cookie-data=STRING
load cookies from STRING.
--http-cookie-file=FILE
load cookies from FILE.
--http-post-data=STRING
use the POST method; send STRING as the data.
--http-post-file=FILE
use the POST method; send contents of FILE
--ftp-user=USER
set ftp user to USER.
--ftp-password=PASS
set ftp password to PASS.
--display=DISPLAY
X display to use
AUTHOR
uget was written by Raymond Huang <plushuang at users.sourceforge.net>,and this manual page was originally written by Dennis Craven
<dcraven@gmail.com>
uget-gtk 1.4.9 July 2009 UGET-GTK(1)