Hi,
I am new to this forum and unix too. I have just started learning unix. As I was going through the first chapter, I read that unix is multitasking, multiprogramming, multiprocessing and multiuser OS.
My question is: Is there any difference between a TASK and a PROCESS. How are PROCESS... (2 Replies)
I have a file contains
TASK gsnmpproxy {
CommandLine = $SMCHOME/bin/gsnmpProxy.exe
}
TASK gsnmpdbgui {
CommandLine = $SMCHOME/bin/gsnmpdbgui.exe
I would like to comment and than uncomment specific task eg TASK gsnmpproxy
Pls suggest how to do in shell script (9 Replies)
I have an ASCII file that I receive on a monthly bases that is fixed length. I break the file into separate files based on a 5 character numerical sequence. I have 20 different sequences I have to find.
the input file looks something like this
xy-ins 2008yuthnrlsinrthsntwilgrha33260001... (4 Replies)
I have an task definition listing xml file that contains a list of tasks such as
<TASKLIST
<TASK definition="Completion date" id="Taskname1" Some other
<CODE name="Code12"
<Parameter pname="Dog" input="5.6" units="feet" etc /Parameter>
<Parameter... (3 Replies)
I need to automate a manual task using shell scripting. The scenario is like :-
#!/usr/bin/sh
echo "please enter the name of the lab server to test ..."
read s
ssh $s
This is peace of the script which will allow me to login to another server using "ssh". I have a conf file which is having... (4 Replies)
Hi experts,
I have a problem with the below shell task:
I need to modify the file creatin a paired row , per each row
which matches filter (e.g. number of nonempty columns = 5)
Output should look like this:
second row is original one from the input,
first row(red) is pairing row, it's... (29 Replies)
I have a simple task for my school work. I'm new with unix, so i need help.
I need to write a scenario. Task is. From created txt file read first 3 words and create a 3 catalogs with those 3 words. 2 of those new catalogs should be transferred to other directory. If someone could help me just... (1 Reply)
Dear All,
I am relatively new to UNIX and wanted to accomplish a simple task which should be automated. That's why I need your help. I shall briefly describe what I want.
Basically, there is a process (X) (related to a particular software which I am using in my system) which automatically... (5 Replies)
Discussion started by: Samiran Dam
5 Replies
LEARN ABOUT DEBIAN
fastx_quality_stats
FASTX_QUALITY_STATS(1) User Commands FASTX_QUALITY_STATS(1)NAME
fastx_quality_stats - FASTX Statistics
DESCRIPTION
usage: fastx_quality_stats [-h] [-N] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.2 by A. Gordon (gordon@cshl.edu)
[-h] = This helpful help screen. [-i INFILE] = FASTQ input file. default is STDIN. [-o OUTFILE] = TEXT output file. default is
STDOUT. [-N] = New output format (with more information per nucleotide/cycle).
The *OLD* output TEXT file will have the following fields (one row per column):
column = column number (1 to 36 for a 36-cycles read solexa file)
count = number of bases found in this column.
min = Lowest quality score value found in this column.
max = Highest quality score value found in this column.
sum = Sum of quality score values for this column.
mean = Mean quality score value for this column.
Q1 = 1st quartile quality score.
med = Median quality score.
Q3 = 3rd quartile quality score.
IQR = Inter-Quartile range (Q3-Q1).
lW = 'Left-Whisker' value (for boxplotting).
rW = 'Right-Whisker' value (for boxplotting).
A_Count = Count of 'A' nucleotides found in this column. C_Count = Count of 'C' nucleotides found in this column. G_Count = Count
of 'G' nucleotides found in this column. T_Count = Count of 'T' nucleotides found in this column. N_Count = Count of 'N' nucleo-
tides found in this column. max-count = max. number of bases (in all cycles)
The *NEW* output format:
cycle (previously called 'column') = cycle number max-count For each nucleotide in the cycle (ALL/A/C/G/T/N):
count = number of bases found in this column.
min = Lowest quality score value found in this column.
max = Highest quality score value found in this column.
sum = Sum of quality score values for this column.
mean = Mean quality score value for this column.
Q1 = 1st quartile quality score.
med = Median quality score.
Q3 = 3rd quartile quality score.
IQR = Inter-Quartile range (Q3-Q1).
lW = 'Left-Whisker' value (for boxplotting).
rW = 'Right-Whisker' value (for boxplotting).
SEE ALSO
The quality of this automatically generated manpage might be insufficient. It is suggested to visit
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.
fastx_quality_stats 0.0.13.2 May 2012 FASTX_QUALITY_STATS(1)
05-22-2011
