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Full Discussion: Parse and Join in a text file
Top Forums Shell Programming and Scripting Parse and Join in a text file Post 302521911 by empyrean on Thursday 12th of May 2011 05:40:40 PM
Old 05-12-2011
Quote:
works good if the sequence is in one line.. its not working for this.. its printing only last line.. any edits??

Code:
ID   013789-0068
PS   TBD
OO   huringiensis
OS   ringiensis
OX
SI   68
RA
RL   2010. OKAYAMA UNIVERSITY,JAPAN LAMB CO LTD
FT   source          1..1176
MT
AC   67106
SV
CT
PN   013789
PT   PROTEIN PRODUCTION METHOD, FUSION PROTEIN, AND ANTISERUM
PA   AMA UNIVERSITY,JAPAN LAMB CO LTD.
PI   HAYAKAWA TORU (JP) SAKAI, HIROSHI, HAYAKAWA, TORU
P8
P4   10013789
P5   0
PC   International Classification: \nUS Classification: \nEuropean Classification: C12N15/62; C07K14/47A25
PR   80199166;
PE   199166
AN   09JP63603
KC   1
P1   ng the DNA into a host bacterium to transform the host bacterium; and (c) causing the exprey further comprise a step of removing the peptide chain (B) from the fusion protein. \n \n
P7
P9   112
PO
PM   10013789;
PB   10013789
PQ   10013789;
EM   esentative
W1   PRT
D1   0204
D2   0217
D3   0730
D4   0801
D5   0204
HL   [L[P9_GQ;0;3,WO2010013789,45,67]] [L[PM_PN_GQNUC;0;12,WO2010013789]] [L[PQ_PN_GQNUC;0;12,WO2010013789]]
CC   mer C1-1-f FH   Key             Location/Qualifiers Copyright (c)Inc. 2011
LS   Application
L2   Publ. Of int. appl. w4

  MDNNPNINECIPYNCLSNPEVEVLGGERIETGYTPIDISLSLTQFLLSEFVPGAGFVLGLVDIIWGIFGPSQWDAFPVQI
  EQLINQRIEEFARNQAISRLEGLSNLYQIYAESFREWEADPTNPALREEMRIQFNDMNSALTTAIPLLAVQNYQVPLLSV
  YVQAANLHLSVLRDVSVFGQRWGFDAATINSRYNDLTRLIGNYTDYAVRWYNTGLERVWGPDSRDWVRYNQFRRELTLTV
  LDIVALFSNYDSRRYPIRTVSQLTREIYTNPVLENFDGSFRGMAQRIEQNIRQPHLMDILNSITIYTDVHRGFNYWSGHQ
  ITASPVGFSGPEFAFPLFGNAGNAAPPVLVSLTGLGIFRTLSSPLYRRIILGSGPNNQELFVLDGTEFSFASLTTNLPST
  IYRQRGTVDSLDVIPPQDNSVPPRAGFSHRLSHVTMLSQAAGAVYTLRAPTFSWQHRSAEFNNIIPSSQITQIPLTKSTN
  LGSGTSVVKGPGFTGGDILRRTSPGQISTLRVNITAPLSQRYRVRIRYASTTNLQFHTSIDGRPINQGNFSATMSSGSNL
  QSGSFRTVGFTTPFNFSNGSSVFTLSAHVFNSGNEVYIDRIEFVPAEVTFEAEYDLERAQKAVNELFTSSNQIGLKTDVT

Last edited by Scott; 05-13-2011 at 08:43 PM.. Reason: Added code tags
 

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LEARN ABOUT DEBIAN

shtool-path

SHTOOL-PATH.TMP(1)					      GNU Portable Shell Tool						SHTOOL-PATH.TMP(1)

NAME

       shtool-path - GNU shtool command dealing with shell path variables

SYNOPSIS

       shtool path [-s|--suppress] [-r|--reverse] [-d|--dirname] [-b|--basename] [-m|--magic] [-p|--path path] str [str ...]

DESCRIPTION

       This command deals with shell $PATH variables. It can find a program through one or more filenames given by one or more str arguments.  It
       prints the absolute filesystem path to the program displayed on "stdout" plus an exit code of 0 if it was really found.

OPTIONS

       The following command line options are available.

       -s, --suppress
	   Supress output. Useful to only test whether a program exists with the help of the return code.

       -r, --reverse
	   Transform a forward path to a subdirectory into a reverse path.

       -d, --dirname
	   Output the directory name of str.

       -b, --basename
	   Output the base name of str.

       -m, --magic
	   Enable advanced magic search for ""perl"" and ""cpp"".

       -p, --path path
	   Search in path. Default is to search in $PATH.

EXAMPLE

	#   shell script
	awk=`shtool path -p "${PATH}:." gawk nawk awk`
	perl=`shtool path -m perl`
	cpp=`shtool path -m cpp`
	revpath=`shtool path -r path/to/subdir`

HISTORY

       The GNU shtool path command was originally written by Ralf S.  Engelschall <rse@engelschall.com> in 1998 for Apache. It was later taken
       over into GNU shtool.

SEE ALSO

       shtool(1), which(1).

18-Jul-2008							   shtool 2.0.8 						SHTOOL-PATH.TMP(1)
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