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Top Forums Shell Programming and Scripting Merge CSV files and create a column with the filename from the original file Post 302520900 by fransanchezoria on Monday 9th of May 2011 01:52:33 PM
Old 05-09-2011
Thank you Klashxx!!

That was a step in the right direction. Actually if I run the command with the example files as I posted in the example it works without any problems. I must have oversimplified my data because when I run it on the real thing the result file is huge, 2,3 GB although the source file are less than 100 Kb altogether. I tried to open with openoffice and in the preview window before importing I can see that there is a column with the file name which is great, then some stuff gets scrambled and repeated.

Here is a sample code of one file:

Code:
"Innography URL",Assignee,"Publication Number","Publication Country","Publication Date",Source,Title,Abstract,"Application Number",Citations,"Est. Expiration Date","Family ID","File Date","First Claim","All Claims",Inventors,"First IP Classification","All IPC Classifications","Kind Code","Priority Date","Normalized Assignee","Number of Claims","Number of Backward References","Number of Forward References","Original Assignee",Strength,"Ultimate Parent","US Classification"
"=Hyperlink(""https://app.innography.com/patents/14530190"",""Innography Link"")","Biora Ab",CA2226570,CA,1997-01-30,"CA Patents","Enamel matrix related polypeptide","The invention relates to novel nucleic acid fragments encoding polypeptides which are capable of mediating contact between enamel and cell surface. The invention also relates to expression vectors containing the nucleic acid fragments according to the invention for production of the protein organisms containing said expression vector methods for producing the polypeptide compositions comprising the polypeptides antibodies or antibody fragments recognizing the polypeptides and methods for treating various hard tissue diseases or disorders.",CA22265," ",2006-12-18,27221209,1996-06-26,,,"Wurtz, Tilmann  | Hammarstr, M Lars | Slaby, Ivan  | Cerny, Radim  | Fong, Cheng Dan",C12N01500900,"C12N 15/09|A61K 31/00|A61K 38/00|A61P 1/00|A61P 1/02|C07K 14/435|C07K 14/47|C07K 14/78|C12N 1/15|C12N 1/19|C12N 1/21|C12N 5/10|C12P 21/02",A1,1995-07-13,"Biora Ab",0,0,0,"BIORA AB","0th-10th Percentile",,435317100

As you can see one column contains an "abstract", the file may have all sort of special characters, could that have been the cause why it didnt work?

Thank you again for your help, really appreciated!
 

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csv(n)								  CSV processing							    csv(n)

NAME
csv - Procedures to handle CSV data. SYNOPSIS
package require Tcl 8.3 package require csv ?0.3? ::csv::join values {sepChar ,} ::csv::joinlist values {sepChar ,} ::csv::read2matrix chan m {sepChar ,} {expand none} ::csv::read2queue chan q {sepChar ,} ::csv::report cmd matrix ?chan? ::csv::split line {sepChar ,} ::csv::split2matrix m line {sepChar ,} {expand none} ::csv::split2queue q line {sepChar ,} ::csv::writematrix m chan {sepChar ,} ::csv::writequeue q chan {sepChar ,} DESCRIPTION
The csv package provides commands to manipulate information in CSV FORMAT (CSV = Comma Separated Values). COMMANDS
The following commands are available: ::csv::join values {sepChar ,} Takes a list of values and returns a string in CSV format containing these values. The separator character can be defined by the caller, but this is optional. The default is ",". ::csv::joinlist values {sepChar ,} Takes a list of lists of values and returns a string in CSV format containing these values. The separator character can be defined by the caller, but this is optional. The default is ",". Each element of the outer list is considered a record, these are separated by newlines in the result. The elements of each record are formatted as usual (via ::csv::join). ::csv::read2matrix chan m {sepChar ,} {expand none} A wrapper around ::csv::split2matrix (see below) reading CSV-formatted lines from the specified channel (until EOF) and adding them to the given matrix. For an explanation of the expand argument see ::csv::split2matrix. ::csv::read2queue chan q {sepChar ,} A wrapper around ::csv::split2queue (see below) reading CSV-formatted lines from the specified channel (until EOF) and adding them to the given queue. ::csv::report cmd matrix ?chan? A report command which can be used by the matrix methods format 2string and format 2chan. For the latter this command delegates the work to ::csv::writematrix. cmd is expected to be either printmatrix or printmatrix2channel. The channel argument, chan, has to be present for the latter and must not be present for the first. ::csv::split line {sepChar ,} converts a line in CSV format into a list of the values contained in the line. The character used to separate the values from each other can be defined by the caller, via sepChar, but this is optional. The default is ",". ::csv::split2matrix m line {sepChar ,} {expand none} The same as ::csv::split, but appends the resulting list as a new row to the matrix m, using the method add row. The expansion mode specified via expand determines how the command handles a matrix with less columns than contained in line. The allowed modes are: none This is the default mode. In this mode it is the responsibility of the caller to ensure that the matrix has enough columns to contain the full line. If there are not enough columns the list of values is silently truncated at the end to fit. empty In this mode the command expands an empty matrix to hold all columns of the specified line, but goes no further. The overall effect is that the first of a series of lines determines the number of columns in the matrix and all following lines are truncated to that size, as if mode none was set. auto In this mode the command expands the matrix as needed to hold all columns contained in line. The overall effect is that after adding a series of lines the matrix will have enough columns to hold all columns of the longest line encountered so far. ::csv::split2queue q line {sepChar ,} The same as ::csv::split, but appending the resulting list as a single item to the queue q, using the method put. ::csv::writematrix m chan {sepChar ,} A wrapper around ::csv::join taking all rows in the matrix m and writing them CSV formatted into the channel chan. ::csv::writequeue q chan {sepChar ,} A wrapper around ::csv::join taking all items in the queue q (assumes that they are lists) and writing them CSV formatted into the channel chan. FORMAT
Each record of a csv file (comma-separated values, as exported e.g. by Excel) is a set of ASCII values separated by ",". For other lan- guages it may be ";" however, although this is not important for this case (The functions provided here allow any separator character). If a value contains itself the separator ",", then it (the value) is put between "". If a value contains ", it is replaced by "". EXAMPLE
The record 123,"123,521.2","Mary says ""Hello, I am Mary""" is parsed as follows: a) 123 b) 123,521.2 c) Mary says "Hello, I am Mary" SEE ALSO
matrix, queue KEYWORDS
csv, matrix, queue, package, tcllib csv 0.3 csv(n)
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