Sir,
I using the following commands in a file (part of a bigger script):
#!/bin/bash
cd /opt/oracle/bin
ls -lt | tail -1 | awk '{print $6}' >> /tmp/ramb.out
If I run this from the command prompt the result is:
2007-05-16
if I run it as a cron job then... (5 Replies)
I am trying to run a Matlab function, file.m, with qsub. Here is a portion of my .sge file:
echo Starting to run Matlab
matlab -nojvm -nodesktop -r "file('${inputfile}');exit;"
echo finished running Matlab
The last two lines of the Matlab function are:
disp('finished');
exit
So my... (1 Reply)
Hey all,
I have a binary file, named "exe1" that receives a parameter. (I don't have its source code).
Executing "exe1" results in creating 3 output files.
I have a bash script that runs "exe1".
I want to enter "exe1" to cluster queue (using subq command)
But i want to do it more than... (1 Reply)
Dear All
I am trying to write a script to set the SGE job execution order. I named each job with 'job1', 'job2' and 'job3'. I want my script to do: When 'job1' execution is complete, 'job2' is executed; when both 'job1' and 'job2' are complete, 'job3' is executed.
First, I tried this... (0 Replies)
I was just wondering if it is permissible to qsub from a bash script as follows:
#! /bin/sh
echo "altering .txt in dir $DIR with retokenize.py"
for f in $DIR/txt/*.txt; do
echo $f;
/l2/nlp/i2b2/retokenize.py < $f > ${f//.txt/.tok};
done
echo "altering .tok in dir $DIR with awk... (0 Replies)
Hello,
I have some issue with qsub and the standard output : I launch a script that "echoes" the string "abc" and then executes a C program in which I print informations with the printf function ; the .o file contains "abc" but not the information displayed by printf. I also tried... (0 Replies)
"bsub -o /dev/null -P something -q normal -a optimize -n 1 -R \"rusage\ span\\" -J GUISETUP_${PID} \"dc_shell-t -f .dc_script_$job_index.tcl -output_log_file .dc_shell_$job_index.log \""
Can anybody please tell me the qsub equivalent for this command?
---------- Post updated at 06:48 AM... (0 Replies)
Hi, i am a general user of linux but we work mostly on windows next i am moving full time on linux.
here is my question:
We have product which consist or several subsystem each subsystem has one module to create logs file dump. and i am going to write that support dump tool.
we need to... (3 Replies)
Linux Server
Hi!
just some help...
I'm using a "Sun Grid Engine" with "qsub"
In one hand I have this code
while read -r H; do echo ${H}; done < list
The number of the lines in the list file is 100.
On the other hand I want to create a job array with the option -t
echo... (3 Replies)
Discussion started by: echo manolis
3 Replies
LEARN ABOUT DEBIAN
sge_request
SGE_REQUEST(5) Sun Grid Engine File Formats SGE_REQUEST(5)NAME
sge_request - Sun Grid Engine default request definition file format
DESCRIPTION
sge_request reflects the format of the files to define default request profiles. If available, default request files are read and processed
during job submission before any submit options embedded in the job script and before any options in the qsub(1) or qsh(1) command-line are
considered. Thus, the command-line and embedded script options may overwrite the settings in the default request files (see qsub(1) or
qsh(1) for details).
There is a cluster global, a user private and a working directory local default request definition file. The working directory local
default request file has the highest precedence and is followed by the user private and then the cluster global default request file.
Note, that the -clear option to qsub(1) or qsh(1) can be used to discard any previous settings at any time in a default request file, in
the embedded script flags or in a qsub(1) or qsh(1) command-line option.
The format of the default request definition files is:
o The default request files may contain an arbitrary number of lines. Blank lines and lines with a '#' sign in the first column are
skipped.
o Each line not to be skipped may contain any qsub(1) option as described in the Sun Grid Engine Reference Manual. More than one option
per line is allowed. The batch script file and argument options to the batch script are not considered as qsub(1) options and thus are
not allowed in a default request file.
EXAMPLES
The following is a simple example of a default request definition file:
=====================================================
# Default Requests File
# request group to be sun4 and a CPU-time of 5hr
-l arch=sun4,s_cpu=5:0:0
# don't restart the job in case of system crashes
-r n
=====================================================
Having defined a default request definition file like this and submitting a job as follows:
qsub test.sh
would have precisely the same effect as if the job was submitted with:
qsub -l arch=sun4,s_cpu=5:0:0 -r n test.sh
FILES
<sge_root>/<cell>/common/sge_request
global defaults file
$HOME/.sge_request user private defaults file
$cwd/.sge_request cwd directory defaults file
SEE ALSO sge_intro(1), qsh(1), qsub(1), Sun Grid Engine Installation and Administration Guide
COPYRIGHT
See sge_intro(1) for a full statement of rights and permissions.
SGE 6.2u5 $Date$ SGE_REQUEST(5)