Sir,
I using the following commands in a file (part of a bigger script):
#!/bin/bash
cd /opt/oracle/bin
ls -lt | tail -1 | awk '{print $6}' >> /tmp/ramb.out
If I run this from the command prompt the result is:
2007-05-16
if I run it as a cron job then... (5 Replies)
I am trying to run a Matlab function, file.m, with qsub. Here is a portion of my .sge file:
echo Starting to run Matlab
matlab -nojvm -nodesktop -r "file('${inputfile}');exit;"
echo finished running Matlab
The last two lines of the Matlab function are:
disp('finished');
exit
So my... (1 Reply)
Hey all,
I have a binary file, named "exe1" that receives a parameter. (I don't have its source code).
Executing "exe1" results in creating 3 output files.
I have a bash script that runs "exe1".
I want to enter "exe1" to cluster queue (using subq command)
But i want to do it more than... (1 Reply)
Dear All
I am trying to write a script to set the SGE job execution order. I named each job with 'job1', 'job2' and 'job3'. I want my script to do: When 'job1' execution is complete, 'job2' is executed; when both 'job1' and 'job2' are complete, 'job3' is executed.
First, I tried this... (0 Replies)
I was just wondering if it is permissible to qsub from a bash script as follows:
#! /bin/sh
echo "altering .txt in dir $DIR with retokenize.py"
for f in $DIR/txt/*.txt; do
echo $f;
/l2/nlp/i2b2/retokenize.py < $f > ${f//.txt/.tok};
done
echo "altering .tok in dir $DIR with awk... (0 Replies)
Hello,
I have some issue with qsub and the standard output : I launch a script that "echoes" the string "abc" and then executes a C program in which I print informations with the printf function ; the .o file contains "abc" but not the information displayed by printf. I also tried... (0 Replies)
"bsub -o /dev/null -P something -q normal -a optimize -n 1 -R \"rusage\ span\\" -J GUISETUP_${PID} \"dc_shell-t -f .dc_script_$job_index.tcl -output_log_file .dc_shell_$job_index.log \""
Can anybody please tell me the qsub equivalent for this command?
---------- Post updated at 06:48 AM... (0 Replies)
Hi, i am a general user of linux but we work mostly on windows next i am moving full time on linux.
here is my question:
We have product which consist or several subsystem each subsystem has one module to create logs file dump. and i am going to write that support dump tool.
we need to... (3 Replies)
Linux Server
Hi!
just some help...
I'm using a "Sun Grid Engine" with "qsub"
In one hand I have this code
while read -r H; do echo ${H}; done < list
The number of the lines in the list file is 100.
On the other hand I want to create a job array with the option -t
echo... (3 Replies)
Discussion started by: echo manolis
3 Replies
LEARN ABOUT DEBIAN
qrerun
qrerun(1B) PBS qrerun(1B)NAME
qrerun - rerun a pbs batch job
SYNOPSIS
qrerun [-f] job_identifier ...
DESCRIPTION
The qrerun command directs that the specified jobs are to be rerun if possible.
To rerun a job is to terminate the session leader of the job and return the job to the queued state in the execution queue in which the job
currently resides.
If a job is marked as not rerunable then the rerun request will fail for that job. If the mini-server running the job is down, or the
rejects the request, the Rerun Job batch request will return a failure unless -f is used.
Using -f violates IEEE Batch Processing Services Std and should be handled with great care. It should only be used under exceptional cir-
cumstances. Best practice is to fix the problem mini-server host and letting qrerun run normally. The previous nodes may need manual
cleaning. See the -r option on the qsub and qalter commands.
OPERANDS
The qrerun command accepts one or more job_identifier operands of the form:
sequence_number[.server_name][@server]
STANDARD ERROR
The qrerun command will write a diagnostic message to standard error for each error occurrence.
EXIT STATUS
Upon successful processing of all the operands presented to the qrerun command, the exit status will be a value of zero.
If the qrerun command fails to process any operand, the command exits with a value greater than zero.
SEE ALSO qsub(1B), qalter(1B), pbs_alterjob(3B), pbs_rerunjob(3B)Localqrerun(1B)