I reinstalled my Linux box with RedHat 7.2 and used the ext3 journaling file system. This thing is a pig now. There isn't much running on the box, and performance is sad. (1 Reply)
Is it slower to open or create a file in a directory with 1 million files than a directory with 1000 files? How much slower? Where can I find information about this?
I'm mainly concerned about JFS on AIX, but also NTFS on Windows Server. Is there a difference?
I'm trying to determine a good... (6 Replies)
Hi all, I have a php file that grabs xml, parses it and updates my db accordingly. I want to automate the execution of this process, rather than having to hit the url manually.
I have been looking into using cron to execute a script to do this, however i'm not exactly sure what command i would... (1 Reply)
hi,
in my application, i have set up to capture SIGINT and execute a handler.the problem is whenever i hit C-c, multiple SIGINT are sent to the application.I have blocked the SIGINT right after catching the first one but it is unsuccessful.Here is what i do :
jmp_buf main_loop;
int... (1 Reply)
I have a unix shell script (ex.sh) written.
How to find out how many users (incl. myself) have run this .sh ?
I can insert code snipet at top of script if need be.
- Ravi (2 Replies)
Hello,
I'm having trouble looking for info for SUSIE on this CVE-2012-4681.
This is basically the newest Java hit. It is mostly a web browser issue but I would like to see if the versions on our servers are vulnerable. I already found the pages/info for Solaris and RHEL.
Any help would be... (4 Replies)
Hello,
I'm having an issue with VNC. Security at work says that they scanned my servers (Solaris, RHEL, SLES) and found that you don't need a password to access a VNC session. I have tested this and you can't login to the VNC session without a password. Can someone tell what the Retina scanner... (1 Reply)
Hello,
I know that gnu grep has option of -A and -B to extra previous and next lines.
But I'm using HP UX and its grep does not support these options.
BID="0/0/6/1/1.145.17.255.0.0.0"
I need to search a file using $BID and get next 5 lines and previous 5 lines separately.
Please... (1 Reply)
Hello,
I am looking to hit a URL using curl and click on submit button so that I can get the results. The below is the code
<input name="tos_accepted" id="tos_accepted" class="button" type="submit" value="Yes, I Agree"/>
<input name="tos_discarded" id="tos_discarded"... (1 Reply)
Discussion started by: Kochappa
1 Replies
LEARN ABOUT DEBIAN
bio::search::hit::blasthit
Bio::Search::Hit::BlastHit(3pm) User Contributed Perl Documentation Bio::Search::Hit::BlastHit(3pm)NAME
Bio::Search::Hit::BlastHit - Blast-specific subclass of Bio::Search::Hit::GenericHit
SYNOPSIS
use Bio::Search::Hit::BlastHit;
my $hit = Bio::Search::Hit::BlastHit->new(-algorithm => 'blastp');
# See Bio::Search::Hit::GenericHit for information about working with Hits.
# TODO: Describe how to configure a SearchIO stream so that it generates # GenericHit objects.
DESCRIPTION
This object is a subclass of Bio::Search::Hit::GenericHit and provides some operations that facilitate working with BLAST and PSI-BLAST
Hits.
For general information about working with Hits, see Bio::Search::Hit::GenericHit.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich and Steve Chervitz
Email jason@bioperl.org Email sac@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Search::Hit::GenericHit->new();
Function: Builds a new Bio::Search::Hit::GenericHit object
Returns : Bio::Search::Hit::GenericHit
Args : See Bio::Search::Hit::GenericHit() for other args.
Here are the BLAST-specific args that can be used when
creating BlastHit objects:
-iteration => integer for the PSI-Blast iteration number
-found_again => boolean, true if hit appears in a
"previously found" section of a PSI-Blast report.
iteration
Usage : $hit->iteration( $iteration_num );
Purpose : Gets the iteration number in which the Hit was found.
Example : $iteration_num = $sbjct->iteration();
Returns : Integer greater than or equal to 1
Non-PSI-BLAST reports will report iteration as 1, but this number
is only meaningful for PSI-BLAST reports.
Argument : iteration_num (optional, used when setting only)
Throws : none
See Also : found_again()
found_again
Title : found_again
Usage : $hit->found_again;
$hit->found_again(1);
Purpose : Gets a boolean indicator whether or not the hit has
been found in a previous iteration.
This is only applicable to PSI-BLAST reports.
This method indicates if the hit was reported in the
"Sequences used in model and found again" section of the
PSI-BLAST report or if it was reported in the
"Sequences not found previously or not previously below threshold"
section of the PSI-BLAST report. Only for hits in iteration > 1.
Example : if( $hit->found_again()) { ... };
Returns : Boolean, true(1) if the hit has been found in a
previous PSI-BLAST iteration.
Returns false (0 or undef) for hits that have not occurred in a
previous PSI-BLAST iteration.
Argument : Boolean (1 or 0). Only used for setting.
Throws : none
See Also : iteration()
perl v5.14.2 2012-03-02 Bio::Search::Hit::BlastHit(3pm)