Sponsored Content
Top Forums UNIX for Dummies Questions & Answers Help with finding matching position on strings Post 302507281 by Corona688 on Wednesday 23rd of March 2011 11:35:01 AM
Old 03-23-2011
What is your system? What is your shell?

---------- Post updated at 09:24 AM ---------- Previous update was at 09:18 AM ----------

dna.awk:
Code:
{
        LINE++;
        for(N=0; N<(length($0)-length(STR)); N++)
        if(STR == substr($0, N, length(STR)))
                printf("Line %d, position %d\n", LINE, N);
}

Code:
$ awk -f dna.awk -v STR="GAT" dnafile
Line 1, position 10
Line 3, position 10
Line 3, position 46
$

---------- Post updated at 09:35 AM ---------- Previous update was at 09:24 AM ----------

Slight modification to dna.awk:
Code:
{
        LINE++;
        for(N=0; N<(length($0)-length(STR)); N++)
        if(STR == substr($0, N, length(STR)))
                printf("Line %d, %d-%d\n", LINE, N, N+length(STR));
}

 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

How to insert strings at certain position

Hi, I need to insert strings "0000 00" at the each line within the file. The postion is 37 to 42. ex. name1 name2 0000 00 nam name 0000 00 The "0000 00" in two lines should be lined up. I don't know why it's not lined up when I posted it. Can anyone help? (14 Replies)
Discussion started by: whatisthis
14 Replies

2. Shell Programming and Scripting

finding duplicate files by size and finding pattern matching and its count

Hi, I have a challenging task,in which i have to find the duplicate files by its name and size,then i need to take anyone of the file.Then i need to open the file and find for more than one pattern and count of that pattern. Note:These are the samples of two files,but i can have more... (2 Replies)
Discussion started by: jerome Sukumar
2 Replies

3. Shell Programming and Scripting

Help in finding the max and min position

Hi, I have this input file called ttbitnres (which is catenated and sorted):- 8 0.4444 213 10 0.5555 342 11 0.5555 321 12 0.5555 231 13 0.4444 400 My code is at :- #!/bin/bash echo -e Version "\t" Number of Pass "\t" Number of Fail "\t" Rank Position "\t"Min "\t" Max... (1 Reply)
Discussion started by: ahjiefreak
1 Replies

4. Shell Programming and Scripting

Finding character mismatch position in two strings

Hello, I would like to find an efficient way to compare a pair of strings that differ at one position, and return the difference and position. For example: String1 123456789 String2 123454789 returning something - position 6, 6/4 Thanks in advance, Mike (5 Replies)
Discussion started by: etherite
5 Replies

5. Shell Programming and Scripting

Search for multiple strings in specific position

Hi, I need to search for some strings in specific positions in a file. If the strings: "foo1", "foo2" or "foo3" is on position 266 or position 288 in a file i want the whole line printed. Any idea how to do it? (5 Replies)
Discussion started by: HugoH
5 Replies

6. Shell Programming and Scripting

Finding relative position in a file

Hi, I have a file like 123 aaaaaaaaa ddddddddd vvvvvvvvv 345 ssssssssssss dddddddddd fffffffffff dddd ff 567 --------- sssssssss ddddddd eeeeeeeee (4 Replies)
Discussion started by: saltysumi
4 Replies

7. Shell Programming and Scripting

Finding position of space in a variable

HI All, am trying to find the position of space in a variable, it is working for other characters other than space ulab="ulab1|ulab2" find_pos=`expr index $ulab '|'` echo $find_pos above code worked fine but below one says syntax error ulab="ulab ulab2" find_pos=`expr index $ulab ' '`... (2 Replies)
Discussion started by: ulab
2 Replies

8. Shell Programming and Scripting

awk usage for position matching

i have a requirement like this if the line contains from position 294 to 299 is equal to "prabhu" ,then print entire line . i want to use awk awk '{if(substr(294-299) == 'prabhu') print "line" }' filename (1 Reply)
Discussion started by: ptappeta
1 Replies

9. UNIX for Dummies Questions & Answers

String pattern matching and position

I am not an expert with linux, but following various posts on this forum, I have been trying to write a script to match pattern of charters occurring together in a file. My file has approximately 200 million characters (upper and lower case), with about 50 characters per line. I have merged all... (5 Replies)
Discussion started by: biowizz
5 Replies

10. UNIX for Beginners Questions & Answers

Print strings from a particular position in each line

I am using bash in Fedora 30 From the below lines (ls -l output), how can I print whatever is between the strings 'status_' and '.log' $ ls -l | grep -i status -rw-rw-r--. 1 sysadmin sysadmin 378530 Nov 11 21:58 status_vsbm1.log -rw-rw-r--. 1 sysadmin sysadmin 428776 Nov 11 21:58... (8 Replies)
Discussion started by: kraljic
8 Replies
COLORGCCRC(5)							File Formats Manual						     COLORGCCRC(5)

NAME
colorgccrc - configuration file for colorgcc DESCRIPTION
A colorgccrc configuration file is used to configure the highlighting of the compiler output from colorgcc. SYNTAX
Each line consists of a keyword designating a configuration variable. The keyword is followed by `:' and then one or several values (depending on the keyword). Lines beginning with a hash mark `#' are comments. CONFIGURATION VARIABLES
g++ | gcc | c++ | cc | g77 | gcj | gnat | gpc Specifies the paths to the compilers. Takes one value; a path to the compiler. nocolor Specifies what terminal types colorization should be disabled on. Takes one or several values, separated by whitespace. srcColor Specifies the highlighting attributes source-code should be given. Takes one or several color attributes. See the section COLOR ATTRIBUTES for more information. introColor Specifies the highlighting attributes for normal compiler output. Takes one or several color attributes. See the section COLOR ATTRIBUTES for more information. warningFileNameColor | errorFileNameColor Specifies the highlighting attributes for the filename in a warning or an error, respectively. Takes one or several color attributes. See the section COLOR ATTRIBUTES for more information. warningNumberColor | errorNumberColor Specifies the highlighting attributes for the line-number in a warning or an error, respectively. Takes one or several color attributes. See the section COLOR ATTRIBUTES for more information. warningMessageColor | errorMessageColor Specifies the highlighting attributes for the message-text in a warning or an error, respectively. Takes one or several color attributes. See the section COLOR ATTRIBUTES for more information. COLOR ATTRIBUTES
The following attributes are valid for highlighting. clear, reset bold, underline, underscore, blink, reverse, concealed black, red, green, yellow, blue, magenta, cyan, white on_black, on_red, on_green, on_yellow, on_blue, on_magenta, on_cyan, on_white SEE ALSO
gcc(1), colorgcc(1) HISTORY
Jan 15 2003: Initial version of this manual-page. REPORTING BUGS
Report bugs to <jmoyers@geeks.com> AUTHORS
Jamie Moyers <jmoyers@geeks.com> is the author of colorgcc. This manual page was written by Joe Wreschnig <piman@sacredchao.net>, and modified by David Weinehall <tao@debian.org>, for the Debian GNU/Linux system (but may be used by others). COPYRIGHT
Copyright (C) 2003 Jamie Moyers This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICU- LAR PURPOSE. Jan 15, 2003 COLORGCCRC(5)
All times are GMT -4. The time now is 04:58 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy