No Profile Profile Name PM TP
No Profile AESV-T4733 HYD_SPT_A_A587/r01sr3sl06/port#07-#01-Au4P-4c-TMe-PMFETR15
No Profile AESV-T4733 HYD_SPT_A_A587/r01sr3sl06/port#07-#01-Au4P-4c-TMe-PMNETR15
No Profile AESV-T4733 HYD_SPT_A_A587/r01sr3sl06/port#07-#01-Au4P-4c-TMi-PMFETR15
No Profile AESV-T4733 HYD_SPT_A_A587/r01sr3sl06/port#07-#01-Au4P-4c-TMi-PMNETR15
No Profile AESV-T4733 HYD_SPT_A_A587/r01sr3sl13/port#03-#05-Au4P-4c-TMe-PMFETR15
No Profile AESV-T4733 HYD_SPT_A_A587/r01sr3sl13/port#03-#05-Au4P-4c-TMe-PMNETR15
No Profile AESV-T4733 HYD_SPT_A_A587/r01sr3sl13/port#03-#05-Au4P-4c-TMi-PMFETR15
No Profile AESV-T4733 HYD_SPT_A_A587/r01sr3sl13/port#03-#05-Au4P-4c-TMi-PMNETR15
No Profile AESV-T4733 EBD_BHA_A_A011/r01sr3sl02/port#03-#05-Au4P-4c-TMi-PMNETR15
No Profile AESV-T4733 EBD_BHA_A_A011/r01sr3sl02/port#03-#05-Au4P-4c-TMi-PMFETR15
No Profile AESV-T4733 EBD_BHA_A_A011/r01sr3sl02/port#03-#05-Au4P-4c-TMe-PMNETR15
No Profile AESV-T4733 EBD_BHA_A_A011/r01sr3sl02/port#03-#05-Au4P-4c-TMe-PMFETR15
No Profile AESV-T4733 EBD_BHA_A_A011/r01sr3sl03/port#03-#05-Au4P-4c-TMi-PMNETR15
No Profile AESV-T4733 EBD_BHA_A_A011/r01sr3sl03/port#03-#05-Au4P-4c-TMi-PMFETR15
this is giving for PMTps to no profile even the profile present "AESV-T4733"
please help me to reslove this
---------- Post updated 03-16-11 at 11:06 AM ---------- Previous update was 03-15-11 at 05:28 PM ----------
Hi,
i am new to perl scripting.. i am still learing it.. i am asked to write a perl script which should compare 2 coloums of 2 different files. if those 2 coloumn are same the script should store the both the lines in 2 diff files.
these are files,
file 1:
21767016 226112 char
19136520... (3 Replies)
need to compare 2 csv files and report should containg number of matching lines,different lines ,missing lines in one file using perl.
I dont want to use read line by line and scan thru the second file for matching line ,as this logic was so time consuming .Any ideas.i need the soultion badly .... (2 Replies)
I need to compare 2 csv files and report should containg number of matching lines,different lines ,missing lines in one file using perl.
I dont want to use read line by line and scan thru the second file for matching line ,as this logic was so time consuming .Can other ideas .please respond asap... (2 Replies)
Hi all,
Am new to scripting. So i just need your ideas to help me out. Here goes my requirement.
I have two csv files
1.csv 2.csv
abc,1.24 abc,1
def,2.13 def,1
I need to compare the first column of 1.csv with 2.csv and if matches then need to compare... (2 Replies)
We are testing an application that accesses two tables: A and B. I am to write a script to validate the ouput files of this application.The application marks any account that has become overdue as per rule. When it runs, it updates the overdue flag in the A table according to the following rules:
... (1 Reply)
hi,
As such I am new to perl on google search I found a code for Perl script to compare two files and print differences between them and instead of prinintg I want to store the diff. in a outputfile so can sombody provide assistance upon this from where can I edit in script to store the diff in... (1 Reply)
Hi All,
I've got in a situation where I need to convert .xlsx or .xls formatted files into simple text file or .csv file.
I've found many options but doing this using PERL script is the best way I believe.I'm in AIX box.
Perl code should have 2 params while running. i.e
perl... (1 Reply)
Hi Guys,
I need to write a script to compare the count of two csv files each having 5 columns.
Everyday a csv file is recived.
Now we need to compare the count of todays csv file with yesterday's csv file and if the total count of records is same in todays csv file and yesterday csv file out... (3 Replies)
Example:
I have files in below format
file 1:
zxc,133,joe@example.com
cst,222,xyz@example1.com
File 2 Contains:
hxd
hcd
jws
zxc
cst
File 1 has 50000 lines and file 2 has around 30000 lines :
Expected Output has to be :
hxd
hcd
jws (5 Replies)
Discussion started by: TestPractice
5 Replies
LEARN ABOUT DEBIAN
bio::tools::run::profile
Bio::Tools::Run::Profile(3pm) User Contributed Perl Documentation Bio::Tools::Run::Profile(3pm)NAME
Bio::Tools::Run::Profile
SYNOPSIS
Build a Profile factory
# $paramfile is the full path to the seg binary file
my @params = ('DB',$dbfile,'PROGRAM',$paramfile);
my $factory = Bio::Tools::Run::Profile->new($param);
# Pass the factory a Bio::PrimarySeqI object
# @feats is an array of Bio::SeqFeature::Generic objects
my @feats = $factory->run($seq);
DESCRIPTION
Wrapper module for the pfscan program
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
http://redmine.open-bio.org/projects/bioperl/
AUTHOR - Balamurugan Kumarasamy
Email: fugui@worf.fugu-sg.org
APPENDIX
The rest of the documentation details each of the object
methods. Internal methods are usually preceded with a _
program_name
Title : program_name
Usage : $factory>program_name()
Function: holds the program name
Returns: string
Args : None
program_dir
Title : program_dir
Usage : $factory->program_dir(@params)
Function: returns the program directory, obtained from ENV variable.
Returns: string
Args :
new
Title : new
Usage : my $factory= Bio::Tools::Run::Profile->new($param);
Function: creates a new Profile factory
Returns: Bio::Tools::Run::Profile
Args :
predict_protein_features
Title : predict_protein_features
Usage : DEPRECATED. Use $factory->run($seq) instead.
Function: Runs Profile and creates an array of featrues
Returns : An array of L<Bio::SeqFeature::FeaturePair> objects
Args : A Bio::PrimarySeqI
run
Title : run
Usage : my @feats = $factory->run($seq)
Function: Runs Profile
Returns : An array of L<Bio::SeqFeature::FeaturePair> objects
Args : A Bio::PrimarySeqI
_input
Title : _input
Usage : $factory->_input($seqFile)
Function: get/set for input file
Returns :
Args :
_run
Title : _run
Usage : $factory->_run()
Function: Makes a system call and runs pfscan
Returns : An array of L<Bio::SeqFeature::FeaturePair> objects
Args :
_writeSeqFile
Title : _writeSeqFile
Usage : $factory->_writeSeqFile($seq)
Function: Creates a file from the given seq object
Returns : A string(filename)
Args : Bio::PrimarySeqI
perl v5.12.3 2011-06-18 Bio::Tools::Run::Profile(3pm)