Hi All,
Here is the description of the problem.
I am scripting for database access using k-shell on solaris box
dbaccess <databasename> - << EOF 2>/dev/null | awk 'BEGIN {FS=" "}\
{printf "%s", $1}' | grep -v "^$" | \
read cnt1
OUTPUT TO PIPE cat WITHOUT HEADINGS
select count(*) from... (1 Reply)
Hi unix gurus,
I am trying to store the result of a command into a variable.
But it is not getting stored.
x='hello'
y=echo $x | wc -c
but it is giving the output as 0(zero)
Pls help me its very urgent (7 Replies)
I'm writing a bash shell script to backup several mysql databases. This script will run on a daily basis and send a copy to a remote FTP repository. The filenames are in the format DATE.backup.sql. How do I store the DATE variable so I can delete/move/etc the file on the FTP server the next time... (4 Replies)
how would i go about storing this command in a variable
echo "$LINE" | awk -F"|" '{print $1"|"$2"|"$3"}'
i have tried FOO = ${command up there} but receive the error FOO: not found
aswell as a couple of other attempt but no luck (2 Replies)
Hi Everyone,
I have a code which requires to be stored in different variables and I am achiving it like this.
HOST=`echo $RMP | cut -f2 -d:`
NAME=`echo $RMP | cut -f3 -d:`
DIR=`echo $RMP | cut -f4 -d:`
TYPE=`echo $RMP | cut -f5 -d:`
Is there any other way of storing value... (2 Replies)
Hi all,
I m new to this forum.
I ma facing onei issue.
I have something like this:
length= wc -l < b2| awk '{print $1}'
where b2 is filename having detauls like:
cat b2
abc1
abc4
xyc3
sbdghf4
but when I do echo "$length" it displays nothing
Also I am using awk to overcome... (4 Replies)
Hi,
I have a ftp script there I want to store the o/p of the below command:
sftp -b <batch file> user@password
cat <batch file>
get /remote/file/path/remote_file_name.csv*.gz /local/path
Now the problem is that when I fire this command. Then it gives o/p as:
File... (7 Replies)
hi,
i am writing a shell script in which i read a line in a variable.
FNAME="s1.txt s2.txt s3.txt s4.txt s5.txt"
i want to create a array and store single file names in a array..
so the array should contain
arr="s1.txt"
arr="s2.txt"
arr="s3.txt"
arr="s4.txt"
arr="s5.txt"
how to... (3 Replies)
I would like to use sed to store a variable.
The code is :
echo $HEADERREC
CUTVAR=$(echo "$HEADERREC"|sed 's/SDV/STR')
echo $CUTVAR
Output I am getting now:
0012PVGRSCDVSDV 005 00000000000000000000 2014 0.00
sed: Function s/SDV/STR cannot be parsed.
Desired... (5 Replies)
I have a below syntax its working fine...
var12=$(ps -ef | grep apache | awk '{print $2,$4}')
Im getting expected output as below:
printf "%b\n" "${VAR12}"
dell 123
dell 456
dell 457
Now I wrote a while loop.. the output of VAR12 should be passed as input parameters to while loop and results... (5 Replies)
Discussion started by: sam@sam
5 Replies
LEARN ABOUT DEBIAN
bp_search2tribe
BP_SEARCH2TRIBE(1p) User Contributed Perl Documentation BP_SEARCH2TRIBE(1p)NAME
search2tribe - Turn SearchIO parseable reports(s) into TRIBE matrix
SYNOPSIS
Usage:
search2tribe [-o outputfile] [-f reportformat] [-w/--weight] file1 file2 ..
DESCRIPTION
This script is probably too slow for most people's uses. It is better to use something like scripts/searchio/fastam9_to_table, -m 9 output
from BLAST, or the blast2table from the BLAST O'Reilly book to get a tabular output from these programs and then feed the table into MCL
with the mcxdeblast script and the --m9 option.
This script will turn a protein Search report (BLASTP, FASTP, SSEARCH) into a Markov Matrix for TribeMCL clustering.
The options are:
-o filename - the output filename [default STDOUT]
-f format - search result format (blast, fasta)
(ssearch is fasta format). default is blast.
-w or --weight VALUE - Change the default weight for E(0.0) hits
to VALUE (default=200 (i.e. 1e-200) )
-h - this help menu
Additionally specify the filenames you want to process on the command-line. If no files are specified then STDIN input is assumed. You
specify this by doing: search2tribe < file1 file2 file3
AUTHOR
Jason Stajich, jason-at-bioperl-dot-org
perl v5.14.2 2012-03-02 BP_SEARCH2TRIBE(1p)