I am new to the world of UNIX scripting - and would like to make the following script:
I have 100 files numbered 1-100. However - i would like to continue the file list - so that I add another 100 files following on, so that file 101 = 99; file 102 = 98 ; 103 = 97 and so on....
(basically ...... (6 Replies)
Hi,
I am a beginner in awk scripting! I need your help; I want to replace the fifth column number (which is 15 here) here in this file for example :
ATOM 142 N PRO A 15
ATOM 143 CD PRO A 15
ATOM 144 HD1 PRO A 15
ATOM ... (5 Replies)
I would like to extract the sequences larger than 10 bases but shorter than 18 along with the identifier from a FASTA file that looks like this:
> Seq I
ACGACTAGACGATAGACGATAGA
> Seq 2
ACGATGACGTAGCAGT
> Seq 3
ACGATACGAT
I know I can extract the IDs alone with the following code
grep... (3 Replies)
Hi All
I have a folder that contains hundreds of file with a names
3.msa
4.msa
21.msa
6.msa
345.msa
456.msa
98.msa
...
...
...
I need rename each of this file by adding "core_" in the begiining of each file such as
core_3.msa
core_4.msa
core_21.msa (4 Replies)
Hi All,
I have 100 files named - rep-0.txt, rep-2.txt...rep-99.txt.
They each contain information in the following format:
abc 1 qwe
asd 2 zxc
poi 3 lkj
pdh 4 ldf
hgf 5 tyu
i would like to re-number , so that all the new files (rep0.dat, rep1,dat....) have... (1 Reply)
Hey,
I've been trying to break a massive fasta formatted file into files containing each gene separately. Could anyone help me? I've tried to use the following code but i've recieved errors every time:
for i in *.rtf.out
do
awk '/^>/{f=++d".fasta"} {print > $i.out}' $i
done (1 Reply)
I am new to the world of Linux scripting, and would like to make the following 2 scripts:
I have 67 files named Alk-0001.txt to Alk-0067.txt
I would like them to be numbered Alk-002.txt to Alk-0134.txt
eg
Alk-0001.txt > Alk-0002.txt
Alk-0002.txt > Alk-0004.txt
Alk-0003.txt > Alk-0006.txt
... (3 Replies)
Hi,
In sftp script to get files, I have to rename all the files which I am picking. Rename command does not work here. Is there any way to do this?
I am using #!/bin/ksh
For eg: sftp user@host <<EOF
cd /path
get *.txt
rename *.txt *.txt.done
... (7 Replies)
I have two fasta files as shown below,
File:1
>Contig_1:90600-91187
AAGGCCATCAAGGACGTGGATGAGGTCGTCAAGGGCAAGGAACAGGAATTGATGACGGTC
>Contig_98:35323-35886
GACGAAGCGCTCGCCAAGGCCGAAGAAGAAGGCCTGGATCTGGTCGAAATCCAGCCGCAG
>Contig_24:26615-28387... (11 Replies)
Discussion started by: dineshkumarsrk
11 Replies
LEARN ABOUT DEBIAN
igawk
IGAWK(1) Utility Commands IGAWK(1)NAME
igawk - gawk with include files
SYNOPSIS
igawk [ all gawk options ] -f program-file [ -- ] file ...
igawk [ all gawk options ] [ -- ] program-text file ...
DESCRIPTION
Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1).
AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like
@include getopt.awk
in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path.
OPTIONS
See gawk(1) for a full description of the AWK language and the options that gawk supports.
EXAMPLES
cat << EOF > test.awk
@include getopt.awk
BEGIN {
while (getopt(ARGC, ARGV, "am:q") != -1)
...
}
EOF
igawk -f test.awk
SEE ALSO gawk(1)
Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995.
AUTHOR
Arnold Robbins (arnold@skeeve.com).
Free Software Foundation Nov 3 1999 IGAWK(1)