Bio::LiveSeq::Translation(3pm)				User Contributed Perl Documentation			    Bio::LiveSeq::Translation(3pm)

NAME

       Bio::LiveSeq::Translation - Translation class for LiveSeq

SYNOPSIS

	 #documentation needed

DESCRIPTION

       This stores information about aminoacids translations of transcripts.  The implementation is that a Translation object is the translation
       of a Transcript object, with different possibilities of manipulation, different coordinate system and eventually its own ranges (protein
       domains).

AUTHOR - Joseph A.L. Insana
       Email:  Insana@ebi.ac.uk, jinsana@gmx.net

APPENDIX

       The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

   new
	 Title	 : new
	 Usage	 : $protein = Bio::LiveSeq::Translation->new(-transcript => $transcr);

	 Function: generates a new Bio::LiveSeq::Translation
	 Returns : reference to a new object of class Translation
	 Errorcode -1
	 Args	 : reference to an object of class Transcript

   get_Transcript
	 Title	 : valid
	 Usage	 : $transcript = $obj->get_Transcript()
	 Function: retrieves the reference to the object of class Transcript (if any)
		   attached to a LiveSeq object
	 Returns : object reference
	 Args	 : none

   aa_ranges
	 Title	 : aa_ranges
	 Usage	 : @proteinfeatures = $translation->aa_ranges()
	 Function: to retrieve all the LiveSeq AARange objects attached to a
		   Translation, usually created out of a SwissProt database entry
		   crossreferenced from an EMBL CDS feature.
	 Returns : an array
	 Args	 : none

perl v5.14.2							    2012-03-02					    Bio::LiveSeq::Translation(3pm)