Hi All,
I need to pass a variable to perl script from bash script, where in perl i am using if condition. Here is the cmd what i am using in perl
FROM_DATE="06/05/2008"
TO_DATE="07/05/2008"
"perl -ne ' print if ( $_ >="$FROM_DATE" && $_ <= "$TO_DATE" ) ' filename"
filename has... (10 Replies)
Hi All,
I need to pass 2 variables name 'vamskt' and 'vamsi'.
Here is my question:
delete from gpi.usergroup where usg_user_id in ('vamskt');
delete from gpi.userroles where uro_user_id in ('vamskt');
delete from gpi.user where usr_id in ('vamskt');
insert into gpi.user... (3 Replies)
I am using variable to give the location of the file I am using but I get error.
Here is the code:
LogFile=/tmp/log.email
echo -e "could not close the service - error number $error \n" > $LogFile
well this is not all the code but is enough because the problem start when I try to use the... (3 Replies)
Hello everyone,
I've been looking how to pass variables between bash and php-cli in 1 file. So far i got this:
#!/bin/bash
echo "This is bash"
php << EOF
<?php
echo "This is php\n";
?>
EOF
I would now like to be able to pass a variable declared in the bash to the php. I already... (0 Replies)
Hello, my problem is simple & I searched a lot but I couldn't find anything about it:
Basically I'd like to pass $i to a variable, $i being the positional variable; but it is unknown in the beginning so I can't do it like eg. myvar=$3, it HAS to be the "i"..
First, I tried myvar=$($i) ... (8 Replies)
I have below data:
DAY1=10202013
I am trying below but not getting the desired output:
COUNT=1
DATE=DAY$COUNT
echo "Date is $DATE"
However output I am getting is:
Date is DAY1
I wanted the output as:
Date is 10202013
I tried following as well:
DAY1=10202013
COUNT=1... (3 Replies)
From the command line:
dions-air:scripts dion$ ls -l /Users/dion/Library/Application\ Support/Garmin/Devices/3816821036/History/2014-06-07-055251.TCX
-rw-r--r-- 1 dion staff 157934 7 Jun 06:55 /Users/dion/Library/Application Support/Garmin/Devices/3816821036/History/2014-06-07-055251.TCXworks... (2 Replies)
Heyas
Figured me had a 'typo' in tui-conf-set, i went to fix it.
Now, i also figured, it might be nice to have tui-conf-set report (to console, not only exit code) wether it could save the variable to the file or not.
This said, I appended this code: (the tui-title and tui-echo lines are... (3 Replies)
Bash version 4.4.20 / Ubuntu 16.0.4
Hello,
I tried to write a script that gathers some data and passes them to an executable.
The executed application answers with an error. The echo output in the script returns correct values.
If I copy/paste the last echo command, it get's executed... (2 Replies)
Discussion started by: sushi2k7
2 Replies
LEARN ABOUT DEBIAN
clonalframe
ClonalFrame(1) General Commands Manual ClonalFrame(1)NAME
ClonalFrame - inference of bacterial microevolution using multilocus sequence data
SYNOPSIS
ClonalFrame [OPTIONS] inputfile outputfile
DESCRIPTION
ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homolo-
gous recombination events that have disrupted the clonal inheritance.
Options:
-x NUM Sets the number of iterations after burn-in (default is 50000)
-y NUM Sets the number of burn-in iterations (default is 50000)
-z NUM Sets the number of iterations between samples (default is 100)
-e NUM Sets the number of branch-swapping moves per iterations (default is so that half of the time is spent branch-swapping)
-m NUM Sets the initial value of theta to NUM (default is Watterson estimate)
-d NUM Sets the initial value of delta to NUM (default is 0.001)
-n NUM Sets the initial value of nu to NUM (default is 0.01)
-r NUM Sets the initial value of R to NUM (default is initial theta/10)
-M Do update the value of theta
-D Do not update the value of delta
-N Do not update the value of nu
-R Do not update the value of R
-T Do not update the topology
-A Do not update the ages of the nodes
-G Remove all gaps
-H Remove all gaps at non-polymorphic positions
-t NUM Indicate which initial tree to use: 0 for a null tree, 1 for a uniformly chosen coalescent tree and 2 for UPGMA tree (default)
-w FILE
Use Newick file for initial tree
-a NUM Sets the first parameter of the beta prior distribution of nu
-b NUM Sets the second parameter of the beta prior distribution of nu
-U Use uniform priors for rho, theta and delta
-B Run in BURST mode
-C Run in UPGMA mode with a site-by-site bootstrap procedure
-c Run in UPGMA mode with a fragment-by-fragment bootstrap procedure
-S NUM Sets the seed for the random number generator to NUM
-E NUM Sets the rate of exponential growth (default is 0)
-I Ignores first block in the alignment
-L Clean-up the alignment before running ClonalFrame
-l Minimum distance between two reference sites (default is 50)
-v Verbose mode
AUTHOR
ClonalFrame was written by Xavier Didelot.
This manual page was written by Andreas Tille <tille@debian.org>, for the Debian project (but may be used by others).
February 2011 1.2 ClonalFrame(1)