I am not getting the expected output file.
What I need is to combine these 2 awk codes into one
The first one is getting the SeqIDs and the sequences but it does not list in the first line the number of sequences or the length.
The second one takes care of the number of sequences and the length but it does not output the IDs and sequences.
I would like to modify the first code so it can include the number of sequences and length in the very first line.
Thanks!
Hi,
Is there any way to change one date format to another ?? I mean I have a file having dates in the format (Thu Sep 29 2005) ... and i wud like to change these to YYYYMMDD format .. is there any command which does so ?? Or anything like enum which we have in C ??
Thanks in advance,
... (5 Replies)
Hi,
There are lots of threads about how to manipulate the date using date +%m %.......
But how can I change the default format of the commad date?
$ date
Mon Apr 10 10:57:15 BST 2006
This would be on fedora and SunOs.
Cheers,
Neil (4 Replies)
Dear Experts,
Currently my script is gereating the output like this as mentioned below.
8718,8718,0,8777
7450,7450,0,7483
5063,5063,0,5091
3840,3840,0,3855
3129,3129,0,3142
2400,2400,0,2419
2597,2597,0,2604
3055,3055,0,3078
4249,4249,0,4266
4927,4927,0,4957
8920,8920,0,8978... (4 Replies)
Hi, I have a column in a table of Timestamp datatype. For Example : Var1 is the column 2008-06-26-10.10.30.2006. I have Given query as date(var1) and time (var1) I got the file as in the below format :
File1:
Col1 Col2
2008-06-02|12.36.06
2008-06-01|23.36.35
But the problem is... (7 Replies)
i have an variable mydate=2008Nov07
i want o/p as in variable mymonth=11 (i.e nov comes on 11 number month)
i want some command to do this for any month without using any loop.
plz help me (1 Reply)
Hi,
I'm in need of creating a file in the fasta format:
>1A6A.A
HVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITN
VPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR
VEHWGLDEPLLKHWEF
>1A6A.B ... (5 Replies)
I have a list of dates in the following format: mm/dd/yyyy and want to change these to the MySQL standard format: yyyy-mm-dd.
The dates in the original file may or may not be zero padded, so April is sometimes "04" and other times simply "4".
This is what I use to change the format:
sed -i '' -e... (2 Replies)
Hi all,
I have a file with below data
af23b|11-FEB-12|acc7
ad23b|12-JAN-12|acc4
as23b|15-DEC-11|acc5
z123b|18-FEB-12|acc1
I need the output as below:-(date in yyyymmdd format)
af23b|20120211|acc7
ad23b|20120112|acc4
as23b|20111215|acc5
z123b|20120218|acc1
Please help me on this.... (7 Replies)
Hi,
I am having a file of dna sequences in fasta format which look like this:
>admin_1_45
atatagcaga
>admin_1_46
atatagcagaatatatat
with many such thousands of sequences in a single file. I want to the replace the accession Id "admin_1_45" similarly in following sequences to... (5 Replies)
Hello all,
I am tryign to change the format of files (which are many in numbers). They at present are named like this:
SomeProcess_M-130_100_1_3BR.root
SomeProcess_M-130_101_2_3BX.root
SomeProcess_M-130_103_3_3RY.root
SomeProcess_M-130_105_1_3GH.root
SomeProcess_M-130_99_1_3LF.root... (7 Replies)
Discussion started by: emily
7 Replies
LEARN ABOUT DEBIAN
fastautils
fastautils(1) FASTA format file manipulation utilities fastautils(1)NAME
fastautils - FASTA format file manipulation utilities
SYNOPSIS
fastachecksum [ options ] <input file>
fastaclean
fastaclip
fastacomposition
fastadiff
fastaexplode
fastafetch
fastahardmask
fastaindex
fastalength
fastanrdb
fastaoverlap
fastareformat
fastaremove
fastarevcomp
fastasoftmask
fastasort
fastasplit
fastasubseq
fastatranslate
fastavalidcds
DESCRIPTION
These are utilities for the manipulation of FASTA format sequence databases which are distributed with the exonerate sequence alignment
program.
ENVIRONMENT
Not documented yet.
EXAMPLES
fastalength sequence.fasta
blah blah
VERSION
This documentation accompanies version 2.2.0 of the exonerate package.
AUTHOR
Guy St.C. Slater. <guy@ebi.ac.uk>. See the AUTHORS file accompanying the source code for a list of contributors.
AVAILABILITY
This source code for the exonerate package is available under the terms of the GNU general public licence.
Please see the file COPYING which was distrubuted with this package, or http://www.gnu.org/licenses/gpl.txt for details.
This package has been developed as part of the ensembl project. Please see http://www.ensembl.org/ for more information.
SEE ALSO exonerate(1),e-PCR
fastautils March 2003 fastautils(1)