Sponsored Content
Top Forums Shell Programming and Scripting Undefined "n" value and simplifying script Post 302496137 by Xterra on Saturday 12th of February 2011 11:15:19 AM
Old 02-12-2011
Franklin

I am not quite sure I understand how to modify my script following your suggestion.
You mean something like this?:
Code:
#!/bin/bash
n=$(ls block* | wc -l)
while [ $n -ge 1 ]
do
    mv block${n} infile
    ./dnadist <<-EOF
    D
    Y
    EOF
    rm infile
    mv outfile infile
    ./neighbor <<-EOF
    Y
    EOF
    rm infile
    rm outfile
    sed "s/:[0-9\.-]*//g" outtree > Result${n}
    rm outtree
    n=$(( $n - 1 ))
done

Thanks once again!
 

10 More Discussions You Might Find Interesting

1. Programming

shared object "undefined symbol: fstat" error

Didn't have this problem in AIX, but ported to Linux with GCC compiler and am now getting a runtime error: tssutil: symbol lookup error: /work/agility/devel/bin/libagam.so: undefined symbol: fstat I'm sure most of you know that fstat is an intrinsic function just like printf, memcpy, etc. When I... (5 Replies)
Discussion started by: marcus121
5 Replies

2. AIX

Getting error "Undefined symbol: .u_strlen_2_6"

Hi, I am using xlC compiler. The compilation goes fine but at the time of linking it gives the following error ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more information. ld: 0711-317 ERROR: Undefined symbol: .u_strlen_2_6 ld: 0711-317 ERROR: Undefined symbol:... (0 Replies)
Discussion started by: nachiketv
0 Replies

3. Shell Programming and Scripting

bash: "undefined variable" and pipe

Hi, haven't found anything about this through searching, so may be a new topic: when doing this: set -o nounset set -o errexit find . -name "*.lib" | while read library; do echo ${libary} done echo "after while" I expect the script to exit within the while loop (because of nounset and... (6 Replies)
Discussion started by: nagaidhlig
6 Replies

4. Shell Programming and Scripting

awk command to replace ";" with "|" and ""|" at diferent places in line of file

Hi, I have line in input file as below: 3G_CENTRAL;INDONESIA_(M)_TELKOMSEL;SPECIAL_WORLD_GRP_7_FA_2_TELKOMSEL My expected output for line in the file must be : "1-Radon1-cMOC_deg"|"LDIndex"|"3G_CENTRAL|INDONESIA_(M)_TELKOMSEL"|LAST|"SPECIAL_WORLD_GRP_7_FA_2_TELKOMSEL" Can someone... (7 Replies)
Discussion started by: shis100
7 Replies

5. Programming

make fails with "undefined reference to..."

i am compiling a program called vasp on suse and get the following error. there are many more preprocess and ifort commands prior so i just grabbed the tail of the log file: ./preprocess <main.F | /usr/bin/cpp -P -C -traditional >main.f90 -DMPI -DHOST=\"LinuxIFC\" -DIFC -Dkind8 -DNGZhalf... (6 Replies)
Discussion started by: crimso
6 Replies

6. Solaris

I got "undefined reference to" on gcc

Hell all I tryed to build rmp from sources on Solaris 10. I download source code, install gcc, binutils, and other packs с sunfreeware.com. Doring compilation I got an error: /bin/bash ./libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -fPIC -DPIC -D_REENTRANT -Wall... (0 Replies)
Discussion started by: sluge
0 Replies

7. Emergency UNIX and Linux Support

Perl error: Can't call method "value" on an undefined value

Hi, I am running a perl script to automate a process and I keep running into a error can't find the "value" Can't call method "value" on an undefined value at process_file.pl line 44. file is CVS cell is ifdfdxrfmp.ksh Here is the script I have also attached it as well: ... (2 Replies)
Discussion started by: vpundit
2 Replies

8. Programming

Compiling C++ code with NetCDF libraries: "undefined reference"

Hi! I am trying to compile a C++ code with cmake and gcc on Ubuntu. The code uses NetCDF4 libraries. I specify the path to these libraries as follows: -I/usr/local/include -L/usr/local/lib -lnetcdf -lnetcdf_c++4 "ccmake" and "cmake" work fine. After typing "make" I receive the error... (0 Replies)
Discussion started by: Alauda
0 Replies

9. UNIX for Beginners Questions & Answers

Simplifying awk script using multiple "|"

I have the following script: awk -F "," '{ if ( $4 > 450 && $4 < 550 && $5 > 0.5 ) print $2, $5; else print $2, "0" }' test.txt | awk '{a+=$2}END{for(i in a){print i, a}}' | sort -nk 1.2 | sed 1,2d and a bunch of files that look like the test file attached here. I am outputting all... (2 Replies)
Discussion started by: Xterra
2 Replies

10. Shell Programming and Scripting

Bash script - Print an ascii file using specific font "Latin Modern Mono 12" "regular" "9"

Hello. System : opensuse leap 42.3 I have a bash script that build a text file. I would like the last command doing : print_cmd -o page-left=43 -o page-right=22 -o page-top=28 -o page-bottom=43 -o font=LatinModernMono12:regular:9 some_file.txt where : print_cmd ::= some printing... (1 Reply)
Discussion started by: jcdole
1 Replies
getusershell(3C)					   Standard C Library Functions 					  getusershell(3C)

NAME
getusershell, setusershell, endusershell - get legal user shells SYNOPSIS
#include <unistd.h> char *getusershell(void); void setusershell(void); void endusershell(void); DESCRIPTION
The getusershell() function returns a pointer to a legal user shell as defined by the system manager in the file /etc/shells. If /etc/shells does not exist, the following locations of the standard system shells are used in its place: /bin/bash /bin/csh /bin/jsh /bin/ksh /bin/pfcsh /bin/pfksh /bin/pfsh /bin/sh /bin/tcsh /bin/zsh /sbin/jsh /sbin/pfsh /sbin/sh /usr/bin/bash /usr/bin/csh /usr/bin/jsh /usr/bin/ksh /usr/bin/pfcsh /usr/bin/pfksh /usr/bin/pfsh /usr/bin/sh /usr/bin/tcsh /usr/bin/zsh /usr/xpg4/bin/sh The getusershell() function opens the file /etc/shells, if it exists, and returns the next entry in the list of shells. The setusershell() function rewinds the file or the list. The endusershell() function closes the file, frees any memory used by getusershell() and setusershell(), and rewinds the file /etc/shells. RETURN VALUES
The getusershell() function returns a null pointer on EOF. BUGS
All information is contained in memory that may be freed with a call to endusershell(), so it must be copied if it is to be saved. SunOS 5.10 30 Aug 2004 getusershell(3C)
All times are GMT -4. The time now is 07:05 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy