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Top Forums Web Development Perl join two files by "common" column Post 302494086 by durden_tyler on Friday 4th of February 2011 10:35:50 PM
Old 02-04-2011
The two files do not seem to match even partially!
The string "mira_assembly_rep_c" is present in line 1 of File 1, and it is present in at the beginning of all lines of File 2.

Other than there, there is nothing in common.

What's the logic for the merged file then?

Why is the 2nd line of merged file as follows?

Code:
GT_Specific_CTGSIN-SS-mira_assembly_rep_c5|266|60    TTCTACCTATCGTTTCGGCTCAAGTTAGTGTCAGCAAATGATCCGAACGGTCTGGAAATG   mira_assembly_rep_c5 AT4G10270.1    wound-responsive family protein

And why is the 3rd line of the merged file like so ?

Code:
GT_Specific_CTGSIN-SS-mira_assembly_rep_c8|1386|60_New    TTTTCTTTATAAAGAACAGTCTGTGTGTTAATAATTCTCATCTCCTGTCCGGACATAGAC   -mira_assembly_rep_c8 AT2G33830.2    dormancy/auxin associated family protein

Maybe you could explain how you derived the merged file.

tyler_durden
 

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GIT-MERGE-INDEX(1)                                                  Git Manual                                                  GIT-MERGE-INDEX(1)

NAME
git-merge-index - Run a merge for files needing merging SYNOPSIS
git merge-index [-o] [-q] <merge-program> (-a | [--] <file>*) DESCRIPTION
This looks up the <file>(s) in the index and, if there are any merge entries, passes the SHA-1 hash for those files as arguments 1, 2, 3 (empty argument if no file), and <file> as argument 4. File modes for the three files are passed as arguments 5, 6 and 7. OPTIONS
-- Do not interpret any more arguments as options. -a Run merge against all files in the index that need merging. -o Instead of stopping at the first failed merge, do all of them in one shot - continue with merging even when previous merges returned errors, and only return the error code after all the merges. -q Do not complain about a failed merge program (a merge program failure usually indicates conflicts during the merge). This is for porcelains which might want to emit custom messages. If git merge-index is called with multiple <file>s (or -a) then it processes them in turn only stopping if merge returns a non-zero exit code. Typically this is run with a script calling Git's imitation of the merge command from the RCS package. A sample script called git merge-one-file is included in the distribution. ALERT ALERT ALERT! The Git "merge object order" is different from the RCS merge program merge object order. In the above ordering, the original is first. But the argument order to the 3-way merge program merge is to have the original in the middle. Don't ask me why. Examples: torvalds@ppc970:~/merge-test> git merge-index cat MM This is MM from the original tree. # original This is modified MM in the branch A. # merge1 This is modified MM in the branch B. # merge2 This is modified MM in the branch B. # current contents or torvalds@ppc970:~/merge-test> git merge-index cat AA MM cat: : No such file or directory This is added AA in the branch A. This is added AA in the branch B. This is added AA in the branch B. fatal: merge program failed where the latter example shows how git merge-index will stop trying to merge once anything has returned an error (i.e., cat returned an error for the AA file, because it didn't exist in the original, and thus git merge-index didn't even try to merge the MM thing). GIT
Part of the git(1) suite Git 2.17.1 10/05/2018 GIT-MERGE-INDEX(1)
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