The two files do not seem to match even partially!
The string "mira_assembly_rep_c" is present in line 1 of File 1, and it is present in at the beginning of all lines of File 2.
Other than there, there is nothing in common.
What's the logic for the merged file then?
Why is the 2nd line of merged file as follows?
Code:
GT_Specific_CTGSIN-SS-mira_assembly_rep_c5|266|60 TTCTACCTATCGTTTCGGCTCAAGTTAGTGTCAGCAAATGATCCGAACGGTCTGGAAATG mira_assembly_rep_c5 AT4G10270.1 wound-responsive family protein
And why is the 3rd line of the merged file like so ?
Code:
GT_Specific_CTGSIN-SS-mira_assembly_rep_c8|1386|60_New TTTTCTTTATAAAGAACAGTCTGTGTGTTAATAATTCTCATCTCCTGTCCGGACATAGAC -mira_assembly_rep_c8 AT2G33830.2 dormancy/auxin associated family protein
Maybe you could explain how you derived the merged file.
Hi All,
I have working (Perl) code to combine 2 input files into a single output file using the join function that works to a point, but has the following limitations:
1. I am restrained to 2 input files only.
2. Only the "matched" fields are written out to the "matched" output file and... (1 Reply)
I have n files (for ex:64 files) with one similar column. Is it possible to combine them all based on that column ?
file1
ax100 20 30 40
ax200 22 33 44
file2
ax100 10 20 40
ax200 12 13 44
file2
ax100 0 0 4
ax200 2 3 4 (9 Replies)
Hi,
I have line in input file as below:
3G_CENTRAL;INDONESIA_(M)_TELKOMSEL;SPECIAL_WORLD_GRP_7_FA_2_TELKOMSEL
My expected output for line in the file must be :
"1-Radon1-cMOC_deg"|"LDIndex"|"3G_CENTRAL|INDONESIA_(M)_TELKOMSEL"|LAST|"SPECIAL_WORLD_GRP_7_FA_2_TELKOMSEL"
Can someone... (7 Replies)
Hi,
I'm dealing with an issue and losing a lot of hours figuring out how i would solve this.
I have an input file which looks like this:
('BLABLA +200-GRS','Serviço ','TarifaçãoServiço','wap.bla.us.0000000121',2985,0,55,' de conversão em escada','Dia','Domingos')
('BLABLA +200-GRR','Serviço... (6 Replies)
Hi,
I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column).
I want to write a script to join the files by the first common column so that in the... (5 Replies)
Hi all,
I'm trying to join two .txt file tab delimitated based on a common column.
File 1
transcript_id gene_id length effective_length expected_count TPM FPKM IsoPct
comp1000201_c0_seq1 comp1000201_c0 337 183.51 0.00 0.00 0.00 0.00
comp1000297_c0_seq1 ... (1 Reply)
Dear Ladies & Gents,
I have a requirement to delete all the log files in /var/log/test directory that are older than 10 days and their first line begin with "MSH" or "<?xml" or "FHS". I've put together the following BASH script, but it's erroring out:
for filename in $(find /var/log/test... (2 Replies)
Hello,
This post is already here but want to do this with another way
Merge multiples files with multiples duplicates keys by filling "NULL" the void columns for anothers joinning files
file1.csv:
1|abc
1|def
2|ghi
2|jkl
3|mno
3|pqr
file2.csv:
1|123|jojo
1|NULL|bibi... (2 Replies)
Discussion started by: yjacknewton
2 Replies
LEARN ABOUT DEBIAN
vk_logmerge
VK_LOGMERGE(1) General Commands Manual VK_LOGMERGE(1)NAME
vk_logmerge - a Valgrind XML log file merger
SYNOPSIS
vk_logmerge [flags and input files in any order]
DESCRIPTION
vk_logmerge is a valkyrie(1) helper. Given multiple log files (in xml format) generated by multiple runs on a parallel machine, or multiple
log files generated by sequential runs on a single-processor machine, for the same binary, vk_logmerge merges the log files together, sum-
ming the counts of duplicates, and outputs the result to a single file. As input, vk_logmerge expects the log-files to-be-merged and/or a
file containing the list of log-files to-be-merged, with each entry on a separate line.
Log files can be merged from within valkyrie(1) , or use can invoke vk_logmerge directly.
OPTIONS -h Show help message
-v Be verbose (more -v's give more)
-t Output plain text (non-xml)
-f <log_list>
Obtain input files from <log_list> file (one per line)
-o <writefile>
File to write output to
At least 1 input file must be given.
If no '-o outfile' is given, writes to standard output.
EXAMPLES
vk_logmerge log1.xml -f loglist.fls -o merged.xml
SEE ALSO valkyrie(1), valgrind(1).
AUTHOR
vk_logmerge was written by Donna Robinson, Cerion Armour-Brown and others.
This manual page was written by Hai Zaar <haizaar@haizaar.com>, for the Debian project (but may be used by others).
2009-05-02 VK_LOGMERGE(1)