Sponsored Content
Top Forums Shell Programming and Scripting selecting specific fields in a file (maybe with sed?) Post 302491305 by citaylor on Thursday 27th of January 2011 06:12:57 AM
Old 01-27-2011
How about:
Code:
awk '{ AF=""; DP=""; split($0,fa,/;/); for(f in fa) { if(fa[f] ~ /AF=/) AF=fa[f]; if(fa[f] ~ /DP=/) DP=fa[f]; } print $1 " " $2 " " AF " " DP; }' infile

This User Gave Thanks to citaylor For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Urgent: selecting unique specific content of a file using shell script

Hi, I have a file whose content and format at places is as given below. print coloumn .... coloumn .... coloumn .... skip 1 line print coloumn ... skip 1 line I need to select the following : print coloumn .... coloumn .... coloumn... (2 Replies)
Discussion started by: jisha
2 Replies

2. UNIX for Dummies Questions & Answers

Help with selecting specific lines in a large file

Hello, I need to select the 3 lines above as well as below a search string, including the search string. I have been trying various combinations using sed command without any success. Can anuone help please. Thanking (2 Replies)
Discussion started by: tansha
2 Replies

3. Shell Programming and Scripting

selecting the stanza fields

Hi Friends, I have a stanza file as below : CuDv: name = "hdisk34" status = 0 chgstatus = 3 ddins = "scsidisk" location = "06-08-02" parent = "fscsi0" connwhere = "W_0" PdDvLn = "disk/fcp/mpioosdisk" CuDv: ... (1 Reply)
Discussion started by: vijaya2006
1 Replies

4. Shell Programming and Scripting

Selecting specific 'id's from lines and columns using 'SED' or 'AWK'

Hello experts, I am new to this group and to 'SED' and 'AWK'. I have data (text file) with 5 columns (C_1-5) and 100s of lines (only 10 lines are shown below as an example). I have to find or select only the id numbers (C-1) of specific lines with '90' in the same line (of C_3) AND with '20' in... (6 Replies)
Discussion started by: kamskamu
6 Replies

5. UNIX for Dummies Questions & Answers

using sed delete a line from csv file based on specific data in two separate fields

Hello, :wall: I have a 12 column csv file. I wish to delete the entire line if column 7 = hello and column 12 = goodbye. I have tried everything that I can find in all of my ref books. I know this does not work /^*,*,*,*,*,*,"hello",*,*,*,*,"goodbye"/d Any ideas? Thanks Please... (2 Replies)
Discussion started by: Chris Eagleson
2 Replies

6. Shell Programming and Scripting

Capture specific fields in file

Dear Friends, I have a file a.txt 1|3478.12|487|4578.04|4505.5478|rhfj|rehtire|rhj I want to get the field numbers which have decimal values output: Fields: 2,4,5 Plz help (6 Replies)
Discussion started by: i150371485
6 Replies

7. Shell Programming and Scripting

Parse file for fields and specific text

I have a file of ~500,000 entries in the following: file.txt chr1 11868 12227 ENSG00000223972.5 . + HAVANA exon . gene_id "ENSG00000223972.5"; transcript_id "ENST00000456328.2"; gene_type "transcribed_unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "DDX11L1"; transcript_type... (17 Replies)
Discussion started by: cmccabe
17 Replies

8. Shell Programming and Scripting

sed to add field heards to specific fields

I have tab delimited input that prints out in the format below: I am trying to add field headers to $5 and $6. Not sure if sed is the best tool but my attempt is below. Thank you :). $5 = REF $6 = ALT file ID CHR START STOP 123 1 100 200 A ... (6 Replies)
Discussion started by: cmccabe
6 Replies

9. UNIX for Beginners Questions & Answers

Selecting specific variable in log file

Hi there I am trying to look for a specific word in the log file and I am aware this can be done by grep for example. As there will be multiple entries for this I want to grep the last one to enter the log... how would I go about this - would I have to use tail? Thanks in advance Alex (4 Replies)
Discussion started by: simpsa27
4 Replies

10. UNIX for Beginners Questions & Answers

Extracting specific fields from an XML file

Hello All, I have a requirement to split the input.xml file different files and i have tried using earlier examples(where i have posted in the forum), but still no luck Here is my input.xml <jms-system-resource> <name>UMSJMSSystemResource</name> ... (4 Replies)
Discussion started by: Siv51427882
4 Replies
PAPS(1) 						      General Commands Manual							   PAPS(1)

NAME
paps - UTF-8 to PostScript converter using Pango SYNOPSIS
paps [options] files... DESCRIPTION
paps reads a UTF-8 encoded file and generates a PostScript language rendering of the file. The rendering is done by creating outline curves through the pango ft2 backend. OPTIONS
These programs follow the usual GNU command line syntax, with long options starting with two dashes (`-'). A summary of options is included below. --landscape Landscape output. Default is portrait. --columns=cl Number of columns output. Default is 1. Please notice this option isn't related to the terminal length as in a "80 culums terminal". --font=desc Set the font description. Default is Monospace 12. --rtl Do right to left (RTL) layout. --paper ps Choose paper size. Known paper sizes are legal, letter and A4. Default is A4. Postscript points Each postscript point equals to 1/72 of an inch. 36 points are 1/2 of an inch. --bottom-margin=bm Set bottom margin. Default is 36 postscript points. --top-margin=tm Set top margin. Default is 36 postscript points. --left-margin=lm Set left margin. Default is 36 postscript points. --right-margin=rm Set right margin. Default is 36 postscript points. --gutter-width=gw Set gutter width. Default is 40 postscript points. --help Show summary of options. --header Draw page header for each page. --markup Interpret the text as pango markup. --lpi Set the lines per inch. This determines the line spacing. --cpi Set the characters per inch. This is an alternative method of specifying the font size. --stretch-chars Indicates that characters should be stretched in the y-direction to fill up their vertical space. This is similar to the texttops behaviour. AUTHOR
paps was written by Dov Grobgeld <dov.grobgeld@gmail.com>. This manual page was written by Lior Kaplan <kaplan@debian.org>, for the Debian project (but may be used by others). April 17, 2006 PAPS(1)
All times are GMT -4. The time now is 11:07 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy